Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

81049738 .. 81051631

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG593200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGCCAAGATGCCAAGAGAAGCGTTCCCGAGACTGTGCCGACGATGCCGAATTTCAACGAGCGAAAAACCTCACCGGCTGTCACCACCTCCACTGATATCAAAATCGAATTTGCTCTTTGTTGCTGTGCTAATAGGGTTTGGCTTAATTTGGAGATGGCTGCTGATGTTATAGAGACGCGGATTTGGCCAGTGAAGGCTGCAGTCCGTACATATAGCTTTAAGATCCGCATAAGGCTTTTCAATCAGGTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

86

Amino Acids

9.76

Weight (kDa)

9.3

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	181
AciI	CCGC	2 cut(s)	181, 229
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	52, 110
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	58, 244
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	26, 170
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	4, 188
ApeKI	GCWGC	2 cut(s)	161, 200
ApoI	RAATTY	2 cut(s)	52, 110
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	66, 76
AvaI	CYCGRG	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	148, 187
BccI	CCATC	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	26, 170
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	162, 201
BlsI	GCNGC	2 cut(s)	163, 202
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	148, 187
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	6, 190
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	26, 170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	6, 190
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	181, 229
BspANI	GGCC	2 cut(s)	6, 190
BspFNI	CGCG	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	2 cut(s)	26, 170
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 187
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	148, 187
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	6, 190
BtsIMutI	CAGTG	2 cut(s)	93, 198
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	8 cut(s)	6, 80, 145, 161, 190, 200, 219, 238
CviKI_1	RGCY	8 cut(s)	6, 80, 145, 161, 190, 200, 219, 238
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EaeI	YGGCCR	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	170
FaiI	YATR	5 cut(s)	173, 214, 216, 233, 259
Fnu4HI	GCNGC	2 cut(s)	162, 201
Fsp4HI	GCNGC	2 cut(s)	162, 201
GluI	GCNGC	2 cut(s)	162, 201
HaeIII	GGCC	2 cut(s)	6, 190
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	66, 76
Hpy188III	TCNNGA	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	203, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 187
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	3 cut(s)	90, 204, 233
Lsp1109I	GCAGC	2 cut(s)	148, 187
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MflI	RGATCY	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	3 cut(s)	52, 110, 148
MluNI	TGGCCA	1 cut(s)	190
MnlI	CCTC	2 cut(s)	82, 100
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	147, 222
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	46, 187
NdeII	GATC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	163, 202
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	147, 222
SatI	GCNGC	2 cut(s)	162, 201
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	4 cut(s)	74, 92, 221, 252
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	201
SgeI	CNNG	8 cut(s)	20, 28, 41, 43, 73, 89, 192, 203
Sse9I	AATT	3 cut(s)	52, 110, 148
SsiI	CCGC	2 cut(s)	181, 229
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	52, 110, 148
Tru1I	TTAA	2 cut(s)	147, 222
Tru9I	TTAA	2 cut(s)	147, 222
TscAI	CASTG	2 cut(s)	100, 198
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	161, 200
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	100, 198
XapI	RAATTY	2 cut(s)	52, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.