Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

45338541 .. 45341352

Gene Structure 2812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG243100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCGGTACTGTGCCGACGAAGCCGAATTCCGACGACCGGAAGCCCTCGCCGGCGGTCACGACCTCCACCGGCAAGCGCGTCATCATCAAGAGCGCCGATATGTTCCAGGACATGCAGAAGGAGGCCGTCGAAATCGCCATCGGCGTTAGCTCTCTCTCTCTCTCTCTCTCGAACTTCGTTTGTGTTTTTTTTTTTTGTGTGTTAATCGCTGGATTTGATTCGGAAATAGGTTTTTCGCTTACGGAATTAGGGCTTTTGGTTCAGGCATTTGAGACTCATAGCGTAGAGAAGGACGTGGCGGAGCATATAAAGAAGGAGTTCGATTCGAGGCACGGACCTACTTGGCATTGCATCGTCGGTCGCAATTTCGGTTCATATGTGACTCATGAAACGAACCACTTTGTCTATTTCTACCTGGATCAGAAAGCAGTTTTGCTATTCAAATCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

6.29

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	95 - 158	1.1e-29	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	80, 326
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	469
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	132, 441
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	453
AoxI	GGCC	1 cut(s)	150
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	105, 122
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	362
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	134, 443
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	30, 134, 443
Bme18I	GGWCC	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	362
BmrFI	CCNGG	3 cut(s)	30, 134, 443
BmsI	GCATC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	134, 443
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	2 cut(s)	64, 388
BshFI	GGCC	1 cut(s)	152
BsiEI	CGRYCG	2 cut(s)	64, 388
BsiSI	CCGG	4 cut(s)	30, 64, 77, 96
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	2 cut(s)	80, 326
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	412
BspPI	GGATC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssMI	GATC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	134, 443
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	105, 122
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	445
BstMCI	CGRYCG	2 cut(s)	64, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	134, 443
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	28, 132, 441
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	78, 101
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	105, 122
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	2 cut(s)	20, 94
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	139, 413
CviJI	RGCY	6 cut(s)	6, 49, 70, 152, 177, 280
CviKI_1	RGCY	6 cut(s)	6, 49, 70, 152, 177, 280
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
EciI	GGCGGA	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	132, 441
FaeI	CATG	2 cut(s)	142, 416
FaiI	YATR	8 cut(s)	128, 140, 306, 333, 335, 403, 405, 414
FatI	CATG	2 cut(s)	138, 412
FauNDI	CATATG	1 cut(s)	403
GlaI	GCGC	2 cut(s)	104, 121
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	4 cut(s)	30, 64, 77, 96
HgaI	GACGC	2 cut(s)	20, 94
HhaI	GCGC	2 cut(s)	105, 122
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	142, 416
Hin6I	GCGC	2 cut(s)	103, 120
HinP1I	GCGC	2 cut(s)	103, 120
HinfI	GANTC	4 cut(s)	245, 301, 350, 409
HpaII	CCGG	4 cut(s)	30, 64, 77, 96
Hpy188I	TCNGA	3 cut(s)	58, 250, 450
Hpy188III	TCNNGA	5 cut(s)	85, 115, 196, 413, 474
Hpy99I	CGWCG	4 cut(s)	46, 62, 158, 386
HpyAV	CCTTC	3 cut(s)	139, 310, 334
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	142, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	142, 416
HspAI	GCGC	2 cut(s)	103, 120
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	328
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	82, 406
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MluCI	AATT	3 cut(s)	52, 272, 391
MlyI	GAGTC	2 cut(s)	295, 403
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	4 cut(s)	82, 100, 142, 348
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	230
MspI	CCGG	4 cut(s)	30, 64, 77, 96
MspR9I	CCNGG	3 cut(s)	30, 134, 443
MvaI	CCWGG	2 cut(s)	134, 443
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	46
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	30
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	1 cut(s)	445
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	142, 416
NmuCI	GTSAC	2 cut(s)	82, 406
NspI	RCATGY	1 cut(s)	142
PagI	TCATGA	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	245, 350
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	2 cut(s)	295, 403
PpsI	GAGTC	2 cut(s)	295, 403
Psp6I	CCWGG	2 cut(s)	132, 441
PspGI	CCWGG	2 cut(s)	132, 441
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	295, 403
ScrFI	CCNGG	3 cut(s)	30, 134, 443
SetI	ASST	6 cut(s)	92, 179, 259, 324, 367, 444
SfaNI	GCATC	1 cut(s)	387
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	3 cut(s)	52, 272, 391
SsiI	CCGC	2 cut(s)	80, 326
StyD4I	CCNGG	3 cut(s)	28, 132, 441
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	156, 197, 348, 353
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	3 cut(s)	52, 272, 391
TfiI	GAWTC	2 cut(s)	245, 350
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	82, 406
Tsp45I	GTSAC	2 cut(s)	82, 406
TspDTI	ATGAA	2 cut(s)	390, 429
TspGWI	ACGGA	2 cut(s)	284, 375
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.