Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

566786 .. 568955

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGCCAAGACACCAAGAGAAGAGTTCTCGGGACTGTGCCGACGAAGCCGAATTTCGACGACCGGAAACCCTCGCCGGCTGTCACCACCTCCACCAGCAAGCACGTTTCACGGACCTATCTGGCATTGCATTGTCGGTCGCAATTTTGGGGTGGCAGTCCTTCAATCGAAATGTATACAGTTCCTGAACATGCAAATAATGGGATTTATATGATCCAAGGCATAGAACCGAATATGCATTTTACCACTCCCTTTGAACAAGTTGATGCCATGTACAACGAAGGAGCCCCCGGCAAGTCAGGCTCGAAATGCCTCTGCTGGAGCTGTGGTTTGAGGCAGATCATGTTTTTGGTTTCAAGTCTTTTAATGTGGGTCTCAATGGTTGTCAAGGTAAATGCAGGAAAGGTTGTTGTATCTGGCAAGAATACCAAAGAAACCAAAAGCTCTATGGAAGGCATTTTGGACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

156

Amino Acids

17.25

Weight (kDa)

8.93

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	165, 257, 357
AluBI	AGCT	2 cut(s)	324, 444
AluI	AGCT	2 cut(s)	324, 444
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	217, 289
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bse118I	RCCGGY	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	217, 289
BseMI	GCAATG	1 cut(s)	125
Bsh1285I	CGRYCG	2 cut(s)	64, 140
BsiEI	CGRYCG	2 cut(s)	64, 140
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	64, 77, 291
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	213, 339
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	217, 289
BssMI	GATC	2 cut(s)	213, 339
BssNAI	GTATAC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	217
Bst1107I	GTATAC	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	37, 181
Bst6I	CTCTTC	1 cut(s)	16
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	78, 101
BstKTI	GATC	2 cut(s)	216, 342
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	2 cut(s)	213, 339
BstMCI	CGRYCG	2 cut(s)	64, 140
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 300, 309
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	289
BstZ17I	GTATAC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	78, 101
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	3 cut(s)	191, 271, 343
CviJI	RGCY	7 cut(s)	6, 49, 80, 287, 303, 324, 444
CviKI_1	RGCY	7 cut(s)	6, 49, 80, 287, 303, 324, 444
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	2 cut(s)	215, 341
DpnII	GATC	2 cut(s)	213, 339
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	194, 274, 346
FaiI	YATR	9 cut(s)	177, 192, 210, 212, 224, 236, 272, 344, 449
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	190, 270, 342
FblI	GTMKAC	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	469
GsuI	CTGGAG	1 cut(s)	340
HapII	CCGG	3 cut(s)	64, 77, 291
Hin1II	CATG	3 cut(s)	194, 274, 346
HpaII	CCGG	3 cut(s)	64, 77, 291
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	31, 185
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	2 cut(s)	46, 62
HpyAV	CCTTC	3 cut(s)	171, 275, 446
HpyCH4III	ACNGT	2 cut(s)	37, 181
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	130, 194, 238, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 300, 309
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	194, 274, 346
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	213, 339
LmnI	GCTCC	2 cut(s)	284, 321
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	215, 341
MboI	GATC	2 cut(s)	213, 339
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	52, 143
MnlI	CCTC	4 cut(s)	82, 100, 323, 327
Mph1103I	ATGCAT	1 cut(s)	240
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	365
MspI	CCGG	3 cut(s)	64, 77, 291
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	46, 300, 309
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	213, 339
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	194, 274, 346
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	365
Sau3AI	GATC	2 cut(s)	213, 339
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	7 cut(s)	92, 108, 119, 326, 393, 408, 446
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	52, 143
SspMI	CTAG	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	37, 181
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	57, 168, 305
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	52, 143
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.