Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

64440392 .. 64441438

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCCGGACTGTGCGGACGAAGCCGAATTTTGACGAGCGGAAACCCTCGCCGGCTGTCACCACCTCCACCGGCCAGCGCAGCCGTGGTTTATTGGTTTTGGCGGTTAACTCATTCTTTGGCAAATTTGTGTCTTCGCTTACGATGGCGGAGGCTCTTAATTACAATCAGGTACAGGTATTTGTGAGAGATTTTGTTCCTACTAGTTTGGCCTGCCTTCCAGATTGCTTTGACACATTTCCAACACTTCTTTGTGCAGATGGCTGCAGTCTGCAGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

8.44

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	4 cut(s)	40, 64, 128, 173
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	52, 149
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	198
AhlI	ACTAGT	1 cut(s)	227
AoxI	GGCC	2 cut(s)	97, 234
ApeKI	GCWGC	2 cut(s)	105, 288
ApoI	RAATTY	2 cut(s)	52, 149
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	117, 275
BccI	CCATC	2 cut(s)	163, 278
BceAI	ACGGC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	289, 296
BisI	GCNGC	2 cut(s)	106, 289
BlsI	GCNGC	2 cut(s)	107, 290
Bme1390I	CCNGG	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	29, 109
Bse118I	RCCGGY	2 cut(s)	76, 95
BseDI	CCNNGG	2 cut(s)	29, 109
BseXI	GCAGC	2 cut(s)	117, 275
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	99, 236
BsiSI	CCGG	3 cut(s)	31, 77, 96
BsnI	GGCC	2 cut(s)	99, 236
BspACI	CCGC	4 cut(s)	40, 64, 128, 173
BspANI	GGCC	2 cut(s)	99, 236
BspMAI	CTGCAG	2 cut(s)	293, 300
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	2 cut(s)	29, 109
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	78, 101, 238
BstDSI	CCRYGG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 105
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	289, 296
BstV1I	GCAGC	2 cut(s)	117, 275
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	99, 236
BtgI	CCRYGG	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	78, 101, 238
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	2 cut(s)	76, 95
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	197
CviJI	RGCY	8 cut(s)	6, 49, 80, 99, 108, 179, 236, 288
CviKI_1	RGCY	8 cut(s)	6, 49, 80, 99, 108, 179, 236, 288
CviQI	GTAC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	188
FaiI	YATR	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	106, 289
Fsp4HI	GCNGC	2 cut(s)	106, 289
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	106, 289
HaeIII	GGCC	2 cut(s)	99, 236
HapII	CCGG	3 cut(s)	31, 77, 96
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	31, 77, 96
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	281, 291, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 105
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	44, 90, 109, 113, 179, 185, 250, 258
Lsp1109I	GCAGC	2 cut(s)	117, 275
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	150
MluCI	AATT	3 cut(s)	52, 149, 184
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	3 cut(s)	82, 100, 169
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	2 cut(s)	132, 183
MspI	CCGG	3 cut(s)	31, 77, 96
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	46, 105
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	107, 290
PstI	CTGCAG	2 cut(s)	293, 300
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	132, 183
SatI	GCNGC	2 cut(s)	106, 289
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	3 cut(s)	92, 198, 204
SfcI	CTRYAG	2 cut(s)	289, 296
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	3 cut(s)	52, 149, 184
SsiI	CCGC	4 cut(s)	40, 64, 128, 173
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	3 cut(s)	52, 149, 184
Tru1I	TTAA	2 cut(s)	132, 183
Tru9I	TTAA	2 cut(s)	132, 183
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	105, 288
Tsp45I	GTSAC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	52, 149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.