Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Reverse (-)

10511100 .. 10514019

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G132800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTGAAGACGCCAAGAGAAGCGTCCCTGGAGCTCTGTCGGCGAAGCCCAATTCCGACGACCGGAAACCCTCGCCGGCGGTCACCACAGCCACCGGCAAGCGTGTCATCATCAAGAGCGCCGACATGTTCCAGGATATGCAGAAGGAGGCTGTCGACATCGCCATCGGCGCATTTGAGAAGCACAGCGTAGAGAAGGACGTTGCGGAGTATATTAAGAAGGAGTTCGATAAGAGGCATGGACCCACTTGGCATTGCATCGTCGGTCGTAATTTTGGTTCATATGTGACTCATGAAACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTTTTGCTATTTAAATCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

8.65

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	80, 206
AclWI	GGATC	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	126
AjnI	CCWGG	2 cut(s)	28, 132
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	122, 173
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	30, 134
BfoI	RGCGCY	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	30, 134
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	30, 134
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	51
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	2 cut(s)	63, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	30, 134
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	253
Bsh1285I	CGRYCG	2 cut(s)	64, 268
BsiEI	CGRYCG	2 cut(s)	64, 268
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	4 cut(s)	64, 77, 96, 354
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	80, 206
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	30, 134
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstEII	GGTNACC	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 173
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMCI	CGRYCG	2 cut(s)	64, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 170
BstNI	CCWGG	2 cut(s)	30, 134
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	28, 132
BstV2I	GAAGAC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	78, 101
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	2 cut(s)	122, 173
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	2 cut(s)	13, 20
CviAII	CATG	3 cut(s)	127, 239, 293
CviJI	RGCY	4 cut(s)	35, 49, 92, 152
CviKI_1	RGCY	4 cut(s)	35, 49, 92, 152
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DraI	TTTAAA	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	35
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	28, 132
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	3 cut(s)	130, 242, 296
FaiI	YATR	7 cut(s)	128, 140, 213, 240, 283, 285, 294
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	3 cut(s)	126, 238, 292
FauNDI	CATATG	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	37
GlaI	GCGC	2 cut(s)	121, 172
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	4 cut(s)	64, 77, 96, 354
HgaI	GACGC	2 cut(s)	13, 20
HhaI	GCGC	2 cut(s)	122, 173
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	130, 242, 296
Hin6I	GCGC	2 cut(s)	120, 171
HinP1I	GCGC	2 cut(s)	120, 171
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	4 cut(s)	64, 77, 96, 354
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	157, 313
Hpy188I	TCNGA	2 cut(s)	58, 330
Hpy188III	TCNNGA	2 cut(s)	115, 293
Hpy8I	GTNNAC	2 cut(s)	157, 313
Hpy99I	CGWCG	2 cut(s)	62, 266
HpyAV	CCTTC	3 cut(s)	139, 190, 214
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	142, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 170
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	130, 242, 296
HspAI	GCGC	2 cut(s)	120, 171
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	7 cut(s)	15, 42, 77, 90, 109, 119, 146
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	82, 286
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	52, 271
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	3 cut(s)	82, 142, 228
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	2 cut(s)	216, 348
MspI	CCGG	4 cut(s)	64, 77, 96, 354
MspR9I	CCNGG	2 cut(s)	30, 134
MvaI	CCWGG	2 cut(s)	30, 134
MwoI	GCNNNNNNNGC	2 cut(s)	41, 170
NaeI	GCCGGC	1 cut(s)	78
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	1 cut(s)	325
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	130, 242, 296
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	82, 286
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	292
PciI	ACATGT	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	28, 132
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	28, 132
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	262, 294
SacI	GAGCTC	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	216, 348
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	30, 134
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	2 cut(s)	37, 204
SfaNI	GCATC	1 cut(s)	267
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	242
SmiI	ATTTAAAT	1 cut(s)	349
Sse9I	AATT	2 cut(s)	52, 271
SsiI	CCGC	2 cut(s)	80, 206
SstI	GAGCTC	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	28, 132
SwaI	ATTTAAAT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	156, 228
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	52, 271
Tru1I	TTAA	2 cut(s)	216, 348
Tru9I	TTAA	2 cut(s)	216, 348
TseFI	GTSAC	2 cut(s)	82, 286
Tsp45I	GTSAC	2 cut(s)	82, 286
TspDTI	ATGAA	2 cut(s)	270, 309
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.