Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

22363482 .. 22366267

Gene Structure 2786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTGTTCCGGGGACTGTGCCGACGAAGCCGAATCCCGACGACCGGAAGCCCTCGCCGGCGGTCACTACCTCCACCGGGAAGCGCGTCATCATCAAGAGCGCGGATATGTTCCAGGACATGCAGAAGGAGGCCGTCGAAATCGCCATCGGCGCGTTTGAGACTCACAGCGTAGAGAAGGACGTGGCGGAGCATATAAAGAAGGAGTTCGATTCGAGACACGGACCTACCTGGCATTGCATCGTCGGTCGCAACTTCGGTTCATATGTGACTCATGAAACAAACCACTTTGTCTATTTCTACCTGGATCAGAAAGCAGTTTTGCTATTCAAATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

7.9

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	37 - 119	4.3e-38	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	108, 125, 176
AciI	CCGC	3 cut(s)	83, 125, 209
AclWI	GGATC	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	66, 99
AgsI	TTSAA	1 cut(s)	352
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	135, 251, 324
Alw26I	GTCTC	2 cut(s)	176, 232
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	3 cut(s)	108, 125, 176
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	33, 100
AvaII	GGWCC	1 cut(s)	245
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	137, 253, 326
BcnI	CCSGG	2 cut(s)	33, 100
BcoDI	GTCTC	2 cut(s)	176, 232
Bme1390I	CCNGG	5 cut(s)	33, 100, 137, 253, 326
Bme18I	GGWCC	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	5 cut(s)	33, 100, 137, 253, 326
BmsI	GCATC	1 cut(s)	270
BpuMI	CCSGG	2 cut(s)	33, 100
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 99
Bse118I	RCCGGY	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	3 cut(s)	137, 253, 326
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	66, 99
BseMI	GCAATG	1 cut(s)	256
Bsh1236I	CGCG	3 cut(s)	108, 125, 176
Bsh1285I	CGRYCG	2 cut(s)	67, 271
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	2 cut(s)	67, 271
BsiSI	CCGG	4 cut(s)	32, 67, 80, 99
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	66, 99
BsmAI	GTCTC	2 cut(s)	176, 232
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	3 cut(s)	83, 125, 209
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	3 cut(s)	108, 125, 176
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	12
Bst2UI	CCWGG	3 cut(s)	137, 253, 326
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	81
BstFNI	CGCG	3 cut(s)	108, 125, 176
BstHHI	GCGC	3 cut(s)	108, 125, 176
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	176, 232
BstMBI	GATC	1 cut(s)	328
BstMCI	CGRYCG	2 cut(s)	67, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 173
BstNI	CCWGG	3 cut(s)	137, 253, 326
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	5 cut(s)	31, 98, 135, 251, 324
BstUI	CGCG	3 cut(s)	108, 125, 176
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	81
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	3 cut(s)	108, 125, 176
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	2 cut(s)	20, 97
CviAII	CATG	2 cut(s)	142, 296
CviJI	RGCY	4 cut(s)	6, 52, 73, 155
CviKI_1	RGCY	4 cut(s)	6, 52, 73, 155
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	135, 251, 324
FaeI	CATG	2 cut(s)	145, 299
FaiI	YATR	7 cut(s)	131, 143, 216, 218, 286, 288, 297
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	141, 295
FauNDI	CATATG	1 cut(s)	286
GlaI	GCGC	3 cut(s)	107, 124, 175
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	4 cut(s)	32, 67, 80, 99
HgaI	GACGC	2 cut(s)	20, 97
HhaI	GCGC	3 cut(s)	108, 125, 176
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	145, 299
Hin6I	GCGC	3 cut(s)	106, 123, 174
HinP1I	GCGC	3 cut(s)	106, 123, 174
HinfI	GANTC	4 cut(s)	55, 184, 233, 292
HpaII	CCGG	4 cut(s)	32, 67, 80, 99
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	4 cut(s)	59, 118, 237, 296
Hpy99I	CGWCG	4 cut(s)	49, 65, 161, 269
HpyAV	CCTTC	3 cut(s)	142, 193, 217
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	145, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 173
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	145, 299
HspAI	GCGC	3 cut(s)	106, 123, 174
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	85, 289
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	178, 286
MnlI	CCTC	3 cut(s)	85, 103, 145
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	227
MspI	CCGG	4 cut(s)	32, 67, 80, 99
MspR9I	CCNGG	5 cut(s)	33, 100, 137, 253, 326
MvaI	CCWGG	3 cut(s)	137, 253, 326
MvnI	CGCG	3 cut(s)	108, 125, 176
MwoI	GCNNNNNNNGC	2 cut(s)	49, 173
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	2 cut(s)	33, 100
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	145, 299
NmuCI	GTSAC	2 cut(s)	85, 289
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	1 cut(s)	295
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	55, 233
PfoI	TCCNGGA	1 cut(s)	135
PleI	GAGTC	2 cut(s)	178, 286
PpsI	GAGTC	2 cut(s)	178, 286
Psp6I	CCWGG	3 cut(s)	135, 251, 324
PspGI	CCWGG	3 cut(s)	135, 251, 324
PspPI	GGNCC	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	178, 286
ScrFI	CCNGG	5 cut(s)	33, 100, 137, 253, 326
SetI	ASST	5 cut(s)	95, 207, 250, 254, 327
SfaNI	GCATC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	245
SsiI	CCGC	3 cut(s)	83, 125, 209
StyD4I	CCNGG	5 cut(s)	31, 98, 135, 251, 324
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	159, 231, 236
TaqII	GACCGA	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	55, 233
TseFI	GTSAC	2 cut(s)	85, 289
Tsp45I	GTSAC	2 cut(s)	85, 289
TspDTI	ATGAA	2 cut(s)	273, 312
TspGWI	ACGGA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.