Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

27403708 .. 27405999

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG257300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGCCAAGACGCCAAGAGAAGCATTCCCGGGACTGTGCGGACGAAGCCGAATTTTGACGAGCGGAAACCCTCGCCGGCTGTCACCACCTCCACCGGCCAGCGCCAACAATATCAAATGCATTTAGCTGAAATGGAAGCGGGTAGGGCAGGAATGCCTGTTGTCACTGTAAATCATGATCGTGGTGGCGGCTCAAATGTTAAGGATCTCCATCTGGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTGTGGATGGTGCAGTAACACTTTCTTTTAGAAGGCATTATGGACTTATTGGAAGAAATGGTACTAGAAAAACAACGTTTCTTCCGCAGTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

10.33

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	5 cut(s)	40, 64, 140, 189, 338
AclI	AACGTT	1 cut(s)	329
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	245
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	2 cut(s)	30, 31
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BccI	CCATC	2 cut(s)	219, 254
BcnI	CCSGG	2 cut(s)	30, 31
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	106
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	30, 31
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	30, 31
BpuMI	CCSGG	2 cut(s)	30, 31
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse8I	GATNNNNATC	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	30, 77, 96
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	24, 159
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	178, 205, 247
BspACI	CCGC	5 cut(s)	40, 64, 140, 189, 338
BspANI	GGCC	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	175
BspPI	GGATC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	76, 95
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	178, 205, 247
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	37, 169
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	78, 101
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	181, 208, 250
BstMBI	GATC	3 cut(s)	178, 205, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 146
BstSCI	CCNGG	2 cut(s)	28, 29
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	78, 101
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr9I	CCCGGG	1 cut(s)	29
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	7 cut(s)	6, 49, 80, 99, 128, 192, 222
CviKI_1	RGCY	7 cut(s)	6, 49, 80, 99, 128, 192, 222
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	3 cut(s)	180, 207, 249
DpnII	GATC	3 cut(s)	178, 205, 247
EaeI	YGGCCR	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	1 cut(s)	179
FaiI	YATR	2 cut(s)	177, 294
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	175
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	3 cut(s)	30, 77, 96
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	30, 77, 96
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188III	TCNNGA	2 cut(s)	176, 215
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	212, 279
HpyCH4III	ACNGT	2 cut(s)	37, 169
HpyCH4IV	ACGT	2 cut(s)	244, 329
HpyCH4V	TGCA	2 cut(s)	121, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 146
HpySE526I	ACGT	2 cut(s)	244, 329
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	178, 205, 247
LpnPI	CCDG	7 cut(s)	43, 90, 109, 113, 135, 171, 200
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	244, 329
MaeIII	GTNAC	3 cut(s)	82, 163, 268
MalI	GATC	3 cut(s)	180, 207, 249
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	3 cut(s)	178, 205, 247
MboII	GAAGA	2 cut(s)	318, 326
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	52, 252
MnlI	CCTC	2 cut(s)	82, 100
Mph1103I	ATGCAT	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	3 cut(s)	30, 77, 96
MspR9I	CCNGG	2 cut(s)	30, 31
Mva1269I	GAATGC	2 cut(s)	24, 159
MwoI	GCNNNNNNNGC	2 cut(s)	46, 146
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	30, 31
NdeII	GATC	3 cut(s)	178, 205, 247
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	82, 163
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	2 cut(s)	24, 159
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	178, 205, 247
ScrFI	CCNGG	2 cut(s)	30, 31
SetI	ASST	4 cut(s)	92, 130, 247, 332
SmaI	CCCGGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	52, 252
SsiI	CCGC	5 cut(s)	40, 64, 140, 189, 338
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	28, 29
TaaI	ACNGT	2 cut(s)	37, 169
TaiI	ACGT	2 cut(s)	247, 332
TasI	AATT	2 cut(s)	52, 252
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	82, 163
Tsp45I	GTSAC	2 cut(s)	82, 163
TspMI	CCCGGG	1 cut(s)	29
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.