Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003537

Physical Location & Seq

Genomic Coordinates Forward (+)

55846745 .. 55848485

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG415600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 254 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCGGGACTGTGCCGATGAAGCCGAATTTCAACGAGCGGAAACCCTCGCCGGCTGTCACCACCTCCACCGGCAAGCGCGTGTTTCTGAGAGATTTTGTTCCTACTGGTTTGGCCTGCCTTTCAGATGGCTTTGACACATTTCCAACACTTCTTTGTGCAGATGGCTGCAGTATGCAAATATTAGGCTCTTGCTGTGTTTCTTTTATCATACTAGCGCCCTCGTCCAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0010970 GO:0015629 GO:0015630 GO:0016043 GO:0016459 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0046982 GO:0046983 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0097110 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

84

Amino Acids

8.92

Weight (kDa)

8.37

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15930 AT4G15930
fragaria_vesca	FvH4_4g18520 FvH4_4g18520
malus_domestica	MD13G1166300.v1.1 MD16G1166100.v1.1
prunus_persica	Prupe.1G132800_v2.0.a1 Prupe.1G132800_v2.0.a1
pyrus_communis	pycom16g14050
rosa_chinensis	RchiOBHm_Chr2g0117161 RchiOBHm_Chr4g0423081
rosa_laevigata	RLG00000007588
rosa_multiflora	Rmu_sc0003669.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431590 Rroxscaffold_7G00213090
rosa_rugosa	Rorug04G0183600
rosa_samantha	Rh1AG192300 Rh1DG131400 Rh2AG199600 Rh2AG249600 Rh2AG493300 Rh2BG593200 Rh2CG253700 Rh2CG479500 Rh2DG136800 Rh2DG257300 Rh3BG319600 Rh4AG243300 Rh4BG248000 Rh4CG257800 Rh4DG243100 Rh5DG009100 Rh6BG298500 Rh7AG415600
rosa_wichuraiana	Rw4G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	105, 244
AsuC2I	CCSGG	2 cut(s)	30, 31
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	146, 182
BcnI	CCSGG	2 cut(s)	30, 31
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
Bme1390I	CCNGG	2 cut(s)	30, 31
BmeT110I	CYCGRG	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	30, 31
BpuMI	CCSGG	2 cut(s)	30, 31
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse1I	ACTGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	30, 77, 96
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	29
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	76, 95
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	78, 101, 142
BstDEI	CTNAG	1 cut(s)	113
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	105, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	28, 29
BstSFI	CTRYAG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	78, 101, 142
CfoI	GCGC	2 cut(s)	105, 244
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr9I	CCCGGG	1 cut(s)	29
CseI	GACGC	1 cut(s)	20
CviJI	RGCY	7 cut(s)	6, 49, 80, 140, 156, 192, 213
CviKI_1	RGCY	7 cut(s)	6, 49, 80, 140, 156, 192, 213
DdeI	CTNAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	29
FaiI	YATR	2 cut(s)	200, 236
FaqI	GGGAC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	104, 243
GluI	GCNGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	30, 77, 96
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	105, 244
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	103, 242
HinP1I	GCGC	2 cut(s)	103, 242
HpaII	CCGG	3 cut(s)	30, 77, 96
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	114, 151
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	185, 195, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	2 cut(s)	103, 242
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	43, 90, 109, 117, 154
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	64
MluCI	AATT	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	2 cut(s)	82, 100
MroNI	GCCGGC	1 cut(s)	76
MspI	CCGG	3 cut(s)	30, 77, 96
MspR9I	CCNGG	2 cut(s)	30, 31
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	46
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	30, 31
NgoMIV	GCCGGC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	30, 31
SetI	ASST	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	193
SmaI	CCCGGG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	1 cut(s)	64
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	28, 29
TaaI	ACNGT	1 cut(s)	37
TasI	AATT	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	59
TspMI	CCCGGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.