Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

9644574 .. 9646408

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTGGGGAAATCATGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTCAGCCGGTGCATGACCTTACCATTGGTGTTGAATTTGGGGCTAGGATGATCACCATCGATAACAAACCTATCAAGCTTCAGATCTGGGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGCTGCAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATAAGTGTGATCTTGCTCACAGAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAAGGAGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCATTCATTAAGACAGCTGCAACAATATACAAGAAGATTCAAGATGGTGTGTTTGATGTGTCAAATGAGTCATATGGAATCAAAGTTGGATATGGAGGAATTCCAGGACCATCAGGTGGAAGAGATGGATCAACCTCGCAAGGAGGAGGGTGCTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.16

Weight (kDa)

6.96

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 160	1e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	1.7e-64	Ras family
Roc	PF08477	8 - 122	3.8e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	1 cut(s)	610
AcsI	RAATTY	2 cut(s)	125, 573
AcuI	CTGAAG	2 cut(s)	56, 155
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	87, 590
AgsI	TTSAA	3 cut(s)	22, 125, 515
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	5 cut(s)	169, 236, 293, 297, 491
AluI	AGCT	5 cut(s)	169, 236, 293, 297, 491
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	4 cut(s)	236, 316, 491, 627
ApoI	RAATTY	2 cut(s)	125, 573
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	70, 136
AsuNHI	GCTAGC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	581
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	4 cut(s)	223, 328, 478, 614
BccI	CCATC	5 cut(s)	155, 294, 512, 592, 593
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	4 cut(s)	135, 290, 294, 302
BfmI	CTRYAG	2 cut(s)	226, 237
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	5 cut(s)	237, 317, 492, 628, 631
BlsI	GCNGC	5 cut(s)	238, 318, 493, 629, 632
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	581
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	66
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 590
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	87, 590
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	3 cut(s)	246, 485, 633
BseXI	GCAGC	4 cut(s)	223, 328, 478, 614
BshFI	GGCC	1 cut(s)	443
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	87, 590
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	141, 174, 364, 602
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	241
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	97
BssMI	GATC	4 cut(s)	141, 174, 364, 602
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	23, 589
BstC8I	GCNNGC	3 cut(s)	295, 299, 321
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	4 cut(s)	144, 177, 367, 605
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	141, 174, 364, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 455
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	577
BstSFI	CTRYAG	2 cut(s)	226, 237
BstV1I	GCAGC	4 cut(s)	223, 328, 478, 614
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	3 cut(s)	295, 299, 321
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	4 cut(s)	60, 104, 320, 436
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	4 cut(s)	143, 176, 366, 604
DpnII	GATC	4 cut(s)	141, 174, 364, 602
Eam1104I	CTCTTC	2 cut(s)	23, 589
EarI	CTCTTC	2 cut(s)	23, 589
Eco147I	AGGCCT	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	56, 155
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	262
FaeI	CATG	4 cut(s)	63, 107, 323, 439
FatI	CATG	4 cut(s)	59, 103, 319, 435
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	5 cut(s)	237, 317, 492, 628, 631
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	5 cut(s)	237, 317, 492, 628, 631
FspBI	CTAG	4 cut(s)	135, 290, 294, 302
GluI	GCNGC	5 cut(s)	237, 317, 492, 628, 631
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	4 cut(s)	63, 107, 323, 439
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	197, 511, 542, 552
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	70, 136
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	174, 462
Hpy188III	TCNNGA	2 cut(s)	194, 515
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	372, 392
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4V	TGCA	7 cut(s)	103, 239, 311, 323, 329, 413, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 455
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	63, 107, 323, 439
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	141, 174, 364, 602
LmnI	GCTCC	2 cut(s)	233, 418
LpnPI	CCDG	9 cut(s)	30, 111, 163, 174, 225, 283, 564, 573, 591
Lsp1109I	GCAGC	4 cut(s)	223, 328, 478, 614
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	4 cut(s)	135, 290, 294, 302
MalI	GATC	4 cut(s)	143, 176, 366, 604
MboI	GATC	4 cut(s)	141, 174, 364, 602
MboII	GAAGA	5 cut(s)	10, 56, 317, 520, 606
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	125, 573
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	541
MseI	TTAA	2 cut(s)	282, 483
MslI	CAYNNNNRTG	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	242, 455
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	141, 174, 364, 602
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	4 cut(s)	63, 107, 323, 439
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	197, 511, 552
PflMI	CCANNNNNTGG	1 cut(s)	590
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	5 cut(s)	238, 318, 493, 629, 632
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	282, 483
SatI	GCNGC	5 cut(s)	237, 317, 492, 628, 631
Sau3AI	GATC	4 cut(s)	141, 174, 364, 602
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	2 cut(s)	226, 237
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	324
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	125, 573
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	630
SspMI	CTAG	4 cut(s)	135, 290, 294, 302
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	425
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	125, 573
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	197, 511, 552
Tru1I	TTAA	2 cut(s)	282, 483
Tru9I	TTAA	2 cut(s)	282, 483
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	4 cut(s)	236, 316, 491, 627
TspDTI	ATGAA	2 cut(s)	424, 469
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	125, 573
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	4 cut(s)	135, 290, 294, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.