Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

47283793 .. 47290611

Gene Structure 6819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGTACGACTACTGTTTAAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCATGCATGCTCCTGCGATTCACAAACAAGAATTTCCAGCTTGCGCATGATTGCACCGTTGGTGTCGAGTTCGGCTCTCGCATGGTCACTGTGGAAGGTCGTTTAATTAAGATTCAGATATGGGACACCGCCGGCCAAGAGTCTTTTAGATCCATCACTAGAACTTACTACAGAGGAGCAGCTGGAGCACTGCTGGTTTACGACGTAACCAGGAGGGAGACGTTTAAACATGTCGCAAGCTGGATAGATGATGCCCGGCAGCATGCAAACCCTAACATGACATTCATGCTTATCGGAAACAAGTGTGATCTTCATGATCGAAGAGTTGTCAGCAAAGAGGAAGGGGAGCAATTTGCCAAGGAGAATGGGCTTTTGTTCATGGAGACATCTGCAAGAACTGCTCAAAACATTGAGGATGCCTTCACAAAAACTGCTGCGAAGATTCTTCAAAATATTCATGAAGGCGTTTTTGAAGTATCAAAGGAGTCATCTGGAATCACGGTCGGATATGAACTCCCCGGCCTAGGTTCCTCAGATCAAATCTTTCACCGGAAAACCAATTCAAACCCTTCATCTTCTTCAACCCGATCCAAAGATCCCTCACCTGCCTCGCCGTCCACCACAACCGCCTACAACGCCTCCGCCACGAAATCAATGTCTACGATCAAATCCGAGCAACCCCAATCCCGGCCTTCATCGGTTCGAAAACCCAATTCCAACCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

261

Amino Acids

29.01

Weight (kDa)

8.97

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 163	9.3e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	3e-62	Ras family
Roc	PF08477	8 - 122	1.4e-31	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc16I	TGCGCA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	716
AciI	CCGC	3 cut(s)	186, 684, 699
AclWI	GGATC	3 cut(s)	201, 639, 647
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	2 cut(s)	8, 26
AfiI	CCNNNNNNNGG	2 cut(s)	581, 744
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	506, 530, 621, 639
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	97, 239, 297
AluI	AGCT	3 cut(s)	97, 239, 297
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	269, 434
AlwI	GGATC	3 cut(s)	201, 639, 647
AoxI	GGCC	3 cut(s)	190, 577, 746
ApeKI	GCWGC	3 cut(s)	236, 316, 491
ApoI	RAATTY	1 cut(s)	88
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	103
AsuC2I	CCSGG	3 cut(s)	313, 576, 745
AsuHPI	GGTGA	2 cut(s)	596, 651
AsuII	TTCGAA	1 cut(s)	760
AvrII	CCTAGG	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	248, 328, 478
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	3 cut(s)	313, 576, 745
BcoDI	GTCTC	2 cut(s)	269, 434
BfaI	CTAG	2 cut(s)	216, 581
BfmI	CTRYAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	3 cut(s)	237, 317, 492
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	3 cut(s)	238, 318, 493
Bme1390I	CCNGG	4 cut(s)	268, 313, 576, 745
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	4 cut(s)	268, 313, 576, 745
BmsI	GCATC	2 cut(s)	298, 463
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	760
BpuMI	CCSGG	3 cut(s)	313, 576, 745
BsaJI	CCNNGG	3 cut(s)	414, 574, 580
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 744
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	414, 574, 580
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	581, 744
BseMII	CTCAG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	248, 328, 478
Bsh1285I	CGRYCG	1 cut(s)	561
BshFI	GGCC	3 cut(s)	192, 579, 748
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	5 cut(s)	189, 313, 576, 607, 745
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	581, 744
BsmAI	GTCTC	2 cut(s)	269, 434
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	192, 579, 748
Bsp119I	TTCGAA	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
BspACI	CCGC	3 cut(s)	186, 684, 699
BspANI	GGCC	3 cut(s)	192, 579, 748
BspCNI	CTCAG	1 cut(s)	602
BspHI	TCATGA	2 cut(s)	370, 514
BspLI	GGNNCC	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	3 cut(s)	201, 639, 647
BspT104I	TTCGAA	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	414, 574, 580
BssMI	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
BssT1I	CCWWGG	2 cut(s)	414, 580
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	4 cut(s)	17, 115, 148, 559
Bst6I	CTCTTC	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	5 cut(s)	65, 99, 190, 295, 321
BstDEI	CTNAG	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	7 cut(s)	209, 367, 376, 595, 647, 655, 723
BstMAI	GTCTC	2 cut(s)	269, 434
BstMBI	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
BstMCI	CGRYCG	1 cut(s)	561
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 455, 692
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	3 cut(s)	67, 290, 323
BstSCI	CCNGG	4 cut(s)	266, 311, 574, 743
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	248, 328, 478
BstX2I	RGATCY	2 cut(s)	206, 652
BstYI	RGATCY	2 cut(s)	206, 652
BsuRI	GGCC	3 cut(s)	192, 579, 748
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	2 cut(s)	144, 245
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	5 cut(s)	65, 99, 190, 295, 321
CciI	TCATGA	2 cut(s)	370, 514
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	7, 25
CviJI	RGCY	8 cut(s)	97, 132, 192, 239, 297, 427, 579, 748
CviKI_1	RGCY	8 cut(s)	97, 132, 192, 239, 297, 427, 579, 748
CviQI	GTAC	2 cut(s)	7, 25
DdeI	CTNAG	1 cut(s)	589
DpnI	GATC	7 cut(s)	208, 366, 375, 594, 646, 654, 722
DpnII	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
DraI	TTTAAA	2 cut(s)	21, 283
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	414, 580
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	414, 580
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	414, 580
Esp3I	CGTCTC	1 cut(s)	269
FaqI	GGGAC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	3 cut(s)	237, 317, 492
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	237, 317, 492
FspBI	CTAG	2 cut(s)	216, 581
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	237, 317, 492
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	192, 579, 748
HapII	CCGG	5 cut(s)	189, 313, 576, 607, 745
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	6 cut(s)	75, 169, 197, 499, 542, 552
HpaII	CCGG	5 cut(s)	189, 313, 576, 607, 745
HphI	GGTGA	2 cut(s)	596, 651
Hpy166II	GTNNAC	3 cut(s)	256, 675, 717
Hpy188I	TCNGA	5 cut(s)	174, 353, 563, 592, 730
Hpy188III	TCNNGA	3 cut(s)	371, 515, 549
Hpy8I	GTNNAC	3 cut(s)	256, 675, 717
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	6 cut(s)	146, 392, 487, 512, 636, 759
HpyCH4III	ACNGT	4 cut(s)	17, 115, 148, 559
HpyCH4IV	ACGT	2 cut(s)	261, 278
HpyCH4V	TGCA	4 cut(s)	63, 111, 323, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 455, 692
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	2 cut(s)	261, 278
HspAI	GCGC	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
LmnI	GCTCC	4 cut(s)	72, 233, 242, 403
Lsp1109I	GCAGC	3 cut(s)	248, 328, 478
LweI	GCATC	2 cut(s)	298, 463
MaeI	CTAG	2 cut(s)	216, 581
MaeII	ACGT	2 cut(s)	261, 278
MaeIII	GTNAC	2 cut(s)	142, 262
MalI	GATC	7 cut(s)	208, 366, 375, 594, 646, 654, 722
MboI	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
MboII	GAAGA	6 cut(s)	359, 390, 494, 508, 624, 627
MflI	RGATCY	2 cut(s)	206, 652
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	5 cut(s)	88, 162, 407, 616, 769
MlyI	GAGTC	2 cut(s)	206, 551
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	224, 264, 388, 463, 598, 667, 676, 706
Mph1103I	ATGCAT	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	4 cut(s)	20, 161, 165, 282
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	5 cut(s)	189, 313, 576, 607, 745
MspR9I	CCNGG	4 cut(s)	268, 313, 576, 745
MssI	GTTTAAAC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	242, 455, 692
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	3 cut(s)	313, 576, 745
NdeII	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
NgoMIV	GCCGGC	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	3 cut(s)	67, 290, 323
NspV	TTCGAA	1 cut(s)	760
PacI	TTAATTAA	1 cut(s)	165
PaeI	GCATGC	2 cut(s)	67, 323
PagI	TCATGA	2 cut(s)	370, 514
PaqCI	CACCTGC	1 cut(s)	670
PciI	ACATGT	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	75, 169, 499, 552
PkrI	GCNGC	3 cut(s)	238, 318, 493
PleI	GAGTC	2 cut(s)	205, 550
PmeI	GTTTAAAC	1 cut(s)	283
PpsI	GAGTC	2 cut(s)	205, 550
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	206, 652
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	8, 26
RsaNI	GTAC	2 cut(s)	7, 25
SaqAI	TTAA	4 cut(s)	20, 161, 165, 282
SatI	GCNGC	3 cut(s)	237, 317, 492
Sau3AI	GATC	7 cut(s)	206, 364, 373, 592, 644, 652, 720
SchI	GAGTC	2 cut(s)	206, 551
ScrFI	CCNGG	4 cut(s)	268, 313, 576, 745
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	298, 463
SfcI	CTRYAG	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	760
SphI	GCATGC	2 cut(s)	67, 323
Sse9I	AATT	5 cut(s)	88, 162, 407, 616, 769
SsiI	CCGC	3 cut(s)	186, 684, 699
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	216, 581
StyD4I	CCNGG	4 cut(s)	266, 311, 574, 743
StyI	CCWWGG	2 cut(s)	414, 580
TaaI	ACNGT	4 cut(s)	17, 115, 148, 559
TaiI	ACGT	2 cut(s)	264, 281
TaqI	TCGA	3 cut(s)	123, 376, 760
TasI	AATT	5 cut(s)	88, 162, 407, 616, 769
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	4 cut(s)	75, 169, 499, 552
Tru1I	TTAA	4 cut(s)	20, 161, 165, 282
Tru9I	TTAA	4 cut(s)	20, 161, 165, 282
TscAI	CASTG	2 cut(s)	151, 252
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	236, 316, 491
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	9 cut(s)	331, 359, 424, 503, 531, 582, 618, 741, 770
TspRI	CASTG	2 cut(s)	151, 252
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	3 cut(s)	67, 290, 323
XmaJI	CCTAGG	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	2 cut(s)	216, 581
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.