Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

6411271 .. 6418443

Gene Structure 7173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0081600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGACGATTCCGGATTCAGGTTTCATGATGGAGAACGAGGCGAGCTGCTTACCGCACACGCCGGAGGAGGAGAAGCGGATCATTGACGAATTGACCCGCCAATCCGAAGCCAATGTTAAAGAAGGCAACTTGTTCTACGTAATTTCTAACAGGTGGTTCTCAAGCTGGAAGATGTATGTTGAACAAGGCACCGGAGAGAATGATAAGTGGGATTCTGAATCCCAACATATGGATCTGCTTTCTTCAAAAATTAACAGACCTGGACCAATTGATAATTCTGATATAGTTGAAAAAGAATCCGAGGGAGGTGGAGGTGATCTGCAGCTTCGTAGAATGCTGATGGAAGAGCTTGACTATGTCTTAGTTTCTCAAGAAGTTTGGGAAAAGCTATTTGATTGGTATAAAGGAGGTCCATCATTACCAAGAAAGATGATTTCTCAGGGCGGCATTAATAAGAATTTGATGGTGGAGGTTTACCCATTGTGTCTTAAGATTGTTGATTCTAGAGACAACAGCCAGGCAGTTATCTGGTTAAGCAAAAAGGCTTCTGTCCAGGAGCTTTATGAGAAGGTGCGCACAATTAGAGAAATTGAGCAACAAAAGGCCTGTATCTGGGATTACTTCAACAAGCAGAAGCAGTCATTATTGAATGCTTCGAACCAAACGTTGGAGCAGTTGAACTTGCAGATGGATCAAGAAGTTCTTCTTGAGGTGCAAGTTGATGGAAACTATTCCTCCCAAATTTCCATGGATTCAACTGGAAATGAGTTAGCATTGGTAACTGTAGAACCATCAAGGTCATCGATGACAATTGCCGGGGGTCCTACTTTGTCGAATGGTCATTTGATGGGTTATAATAATAATATGCTTCAGGGAAGCACCGTAAGTGGCTCAGCATCAACAGATACAGATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGAGATAAGGGAGGTTTGGCAGGATTGCAGAATCTCGGAAATACTTGCTTTATGAATAGTTCCCTCCAGTGCTTAGTCCATACACCCCCTCTTGTTGATTATTTTTTGCAAGATTACTCTGATGAGATCAACACAGACAATCCCTTAGGGATGCATGGTGAGCTTGCTCTTGCCTTTGGTGAGCTGTTGAGGAAATTGTGGTCCTCTGGGAGAACAACAATTGCTCCACGTGCATTCAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTTAGTGGTTATAATCAGCATGACTCTCAGGAACTTCTTGCTTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTCAAAAATAAGCCCTACATTGAAACAAAGGATTCAGATGGTCGTCCGGATGAGGAAGTTGCAGATGAGTGTTGGAAAAATCACAAGGCCCGGAATGATTCATTGATTGTGGATGTTTGCCAAGGTCAATATAAGTCAACTTTGGTATGCCCGTCTTGTGCCAAGGTTTCAATTACCTTTGATCCTTTTATGTACTTATCGGTGCCACTACCTTCAACTGTTACTCGGTCAATGACGGTGACTGTACTTTATGGTGATGGACGGGGTCTTCCAATGCCGTACACTGTAACCTTGATAAAAGATCGCTCCGTTAAAGATCTTGTTGAGGCATTGGGGACTGCATGCTGCTTGAAGAGTGATGAAAGCCTTCTGCTTGCTGAGATATACGAGCATCGAATTTATCGATATTTGGAGAGCCCTTCTGAACACTTGTCTTCAATTAAGCCTGATGAACGTATTGTGGCCTATCGGTATTCTAAAGGGGCAGGAACAACCAGACTTGAAATAATGCATCGACGGCAGGAAAAATGTGCATTGGATCCTTTGAAGGGTCAGAGAAAACTTTTTGGAACACCTTTGGTTACTTATCTAGGAGAAGACCAAATAAATGGAGTTGATATTGAAAGAGCTGTTTCTACATCTCTGTCGCCTTTGAGGAGAGCTGTTAAGCTTCATAGTACAAAAGAAAATGGCTCAACTTCAGAAGCTGTTGATGAACCATCAAACAGCTACAATTTGAGGTCCATGGACAATACAGAACTAGAGGAAGCATCTAGCAGGGAGTTATCCTTTCACCTATTTCTAGCCCTTGATGAAAGGGGTCACACATGCAAGCCACTTGAGAAGTTTTCTTCCTTAAAGTCCGGTAAAAATATTAAGGTTTTTCTGGACTGGACTGAGAAAGAAGATGAATCATATGATGCTAGTTACCTGGAGAATCTACCTGAGGTACACAAGTCTGGTAATACTGCAAAGAAAACTCGACAAGAAGCTATTTCCTTATTTACTTGCTTAGAGGCATTCTTGAAGGAAGAACCTTTGGGTCCCTCGGATATGTGGTACTGCCCAAGGTGCAAGGAGCATAGACAGGCTACCAAGAAGCTGGACTTGTGGATGTTGCCAGAGGTTCTGGTTTTTCACTTGAAACGATTCTCATACAGCAGATACTCGAAGAACAAACTCGACAGTTTTGTGACTTTTCCAATTCATAATCTTGATTTGAGTAGATATGTGATGAGCAAGGATGGGAAACCGTATATATATGAGCTATACGCCATTAGCAACCATTATGGTGGTCTAGGTGGTGGGCACTACACTGCATATGCGAAGTTGATTGATGAGAACAGATGGTACCATTTCGATGACAGTCATGTTTCTCCAGTCAGTGAAAGCGACATCAAGACTTCGGCTGCCTATGTGCTTTTTTATCGAAGAGTTAAAAGTGGATCAAATACAGGAGAGGGCGATGCATCAGAGACTCATATGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

927

Amino Acids

104.9

Weight (kDa)

5.51

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	43 - 145	7.8e-22	DUSP domain
UCH	PF00443	322 - 906	1.3e-77	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	322 - 498	7.1e-06	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	855, 1224
Acc16I	TGCGCA	1 cut(s)	575
Acc65I	GGTACC	1 cut(s)	2640
AccB1I	GGYRCC	3 cut(s)	188, 1492, 2640
AccB7I	CCANNNNNTGG	2 cut(s)	229, 667
AccIII	TCCGGA	2 cut(s)	10, 1336
AciI	CCGC	4 cut(s)	53, 76, 97, 444
AclI	AACGTT	1 cut(s)	665
AclWI	GGATC	7 cut(s)	86, 240, 699, 1466, 1823, 1836, 2743
AcsI	RAATTY	3 cut(s)	457, 741, 1686
AcuI	CTGAAG	2 cut(s)	854, 1974
AcvI	CACGTG	1 cut(s)	1175
AfaI	GTAC	7 cut(s)	1484, 1536, 1571, 1969, 2241, 2351, 2642
AfiI	CCNNNNNNNGG	5 cut(s)	17, 229, 612, 667, 1838
AflII	CTTAAG	1 cut(s)	488
AjnI	CCWGG	4 cut(s)	259, 516, 552, 2220
AjuI	GAANNNNNNNTTGG	4 cut(s)	259, 291, 650, 682
Alw26I	GTCTC	2 cut(s)	501, 2759
AlwI	GGATC	7 cut(s)	86, 240, 699, 1466, 1823, 1836, 2743
AlwNI	CAGNNNCTG	1 cut(s)	1997
Aor13HI	TCCGGA	2 cut(s)	10, 1336
AoxI	GGCC	3 cut(s)	603, 1377, 1752
ApeKI	GCWGC	4 cut(s)	45, 322, 1635, 2699
ApoI	RAATTY	3 cut(s)	457, 741, 1686
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	4 cut(s)	702, 730, 1656, 2438
Asp718I	GGTACC	1 cut(s)	2640
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	7 cut(s)	263, 410, 821, 1146, 1378, 2031, 2333
AsuC2I	CCSGG	2 cut(s)	817, 1381
AsuHPI	GGTGA	6 cut(s)	326, 1115, 1136, 1540, 1556, 2075
AsuII	TTCGAA	1 cut(s)	656
AvaII	GGWCC	6 cut(s)	263, 410, 821, 1146, 2031, 2333
AxyI	CCTNAGG	2 cut(s)	1090, 2235
BaeGI	GKGCMC	1 cut(s)	2601
BaeI	ACNNNNGTAYC	2 cut(s)	2231, 2264
BamHI	GGATCC	1 cut(s)	1828
BanI	GGYRCC	3 cut(s)	188, 1492, 2640
BanII	GRGCYC	1 cut(s)	1709
BbrPI	CACGTG	1 cut(s)	1175
BbsI	GAAGAC	3 cut(s)	1550, 1716, 1893
BbvI	GCAGC	4 cut(s)	32, 334, 1622, 2686
BceAI	ACGGC	2 cut(s)	1552, 1823
BciT130I	CCWGG	4 cut(s)	261, 518, 554, 2222
BcnI	CCSGG	2 cut(s)	817, 1381
BcoDI	GTCTC	2 cut(s)	501, 2759
BfaI	CTAG	7 cut(s)	504, 1880, 2051, 2064, 2093, 2214, 2588
BfmI	CTRYAG	2 cut(s)	320, 783
BfrI	CTTAAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	1606
BisI	GCNGC	5 cut(s)	46, 323, 445, 1636, 2700
BlpI	GCTNAGC	1 cut(s)	892
BlsI	GCNGC	5 cut(s)	47, 324, 446, 1637, 2701
Bme1390I	CCNGG	6 cut(s)	261, 518, 554, 817, 1381, 2222
Bme18I	GGWCC	6 cut(s)	263, 410, 821, 1146, 2031, 2333
BmgT120I	GGNCC	7 cut(s)	263, 410, 821, 1146, 1378, 2031, 2333
BmiI	GGNNCC	7 cut(s)	190, 822, 1494, 1830, 2334, 2335, 2642
BmrFI	CCNGG	6 cut(s)	261, 518, 554, 817, 1381, 2222
BmsI	GCATC	8 cut(s)	905, 1086, 1690, 1810, 2069, 2200, 2746, 2768
BpiI	GAAGAC	3 cut(s)	1550, 1716, 1893
BpmI	CTGGAG	3 cut(s)	995, 2243, 2652
Bpu1102I	GCTNAGC	1 cut(s)	892
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	4 cut(s)	145, 354, 728, 2150
BpuMI	CCSGG	2 cut(s)	817, 1381
Bsa29I	ATCGAT	2 cut(s)	803, 1693
BsaAI	YACGTR	2 cut(s)	139, 1175
BsaBI	GATNNNNATC	1 cut(s)	1284
BsaJI	CCNNGG	8 cut(s)	300, 747, 816, 1411, 1452, 2034, 2337, 2357
BsaWI	WCCGGW	4 cut(s)	10, 191, 1336, 2153
BsaXI	ACNNNNNCTCC	4 cut(s)	719, 749, 1153, 1183
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 229, 612, 667, 1838
Bse1I	ACTGG	5 cut(s)	763, 1012, 1266, 2186, 2669
Bse21I	CCTNAGG	2 cut(s)	1090, 2235
Bse8I	GATNNNNATC	1 cut(s)	1284
BseAI	TCCGGA	2 cut(s)	10, 1336
BseBI	CCWGG	4 cut(s)	261, 518, 554, 2222
BseCI	ATCGAT	2 cut(s)	803, 1693
BseDI	CCNNGG	8 cut(s)	300, 747, 816, 1411, 1452, 2034, 2337, 2357
BseGI	GGATG	6 cut(s)	1101, 1270, 1345, 1408, 2409, 2539
BseJI	GATNNNNATC	1 cut(s)	1284
BseLI	CCNNNNNNNGG	5 cut(s)	17, 229, 612, 667, 1838
BseMII	CTCAG	7 cut(s)	452, 906, 1223, 1253, 1659, 2178, 2226
BseNI	ACTGG	5 cut(s)	763, 1012, 1266, 2186, 2669
BseRI	GAGGAG	4 cut(s)	80, 83, 1197, 1960
BseSI	GKGCMC	1 cut(s)	2601
BseXI	GCAGC	4 cut(s)	32, 334, 1622, 2686
BshFI	GGCC	3 cut(s)	605, 1379, 1754
BshNI	GGYRCC	3 cut(s)	188, 1492, 2640
BshVI	ATCGAT	2 cut(s)	803, 1693
BsiSI	CCGG	7 cut(s)	11, 62, 192, 816, 1337, 1381, 2154
BslFI	GGGAC	2 cut(s)	1639, 2319
BslI	CCNNNNNNNGG	5 cut(s)	17, 229, 612, 667, 1838
BsmAI	GTCTC	2 cut(s)	501, 2759
BsmFI	GGGAC	2 cut(s)	1639, 2319
BsmI	GAATGC	4 cut(s)	339, 655, 1178, 2309
BsnI	GGCC	3 cut(s)	605, 1379, 1754
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	2 cut(s)	1709, 2601
Bsp13I	TCCGGA	2 cut(s)	10, 1336
Bsp1720I	GCTNAGC	1 cut(s)	892
Bsp19I	CCATGG	2 cut(s)	747, 2034
BspACI	CCGC	4 cut(s)	53, 76, 97, 444
BspANI	GGCC	3 cut(s)	605, 1379, 1754
BspCNI	CTCAG	7 cut(s)	451, 905, 1222, 1252, 1660, 2179, 2227
BspDI	ATCGAT	2 cut(s)	803, 1693
BspEI	TCCGGA	2 cut(s)	10, 1336
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	7 cut(s)	190, 822, 1494, 1830, 2334, 2335, 2642
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	7 cut(s)	86, 240, 699, 1466, 1823, 1836, 2743
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	656
BspT107I	GGYRCC	3 cut(s)	188, 1492, 2640
BspTI	CTTAAG	1 cut(s)	488
BsrI	ACTGG	5 cut(s)	763, 1012, 1266, 2186, 2669
BssECI	CCNNGG	8 cut(s)	300, 747, 816, 1411, 1452, 2034, 2337, 2357
BssT1I	CCWWGG	5 cut(s)	747, 1411, 1452, 2034, 2357
Bst2UI	CCWGG	4 cut(s)	261, 518, 554, 2222
Bst4CI	ACNGT	9 cut(s)	784, 883, 1510, 1528, 1534, 1576, 2477, 2544, 2657
Bst6I	CTCTTC	3 cut(s)	339, 1637, 2716
BstAFI	CTTAAG	1 cut(s)	488
BstBAI	YACGTR	2 cut(s)	139, 1175
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	5 cut(s)	43, 1110, 1633, 1665, 2123
BstDSI	CCRYGG	2 cut(s)	747, 2034
BstF5I	GGATG	6 cut(s)	1101, 1270, 1345, 1408, 2409, 2539
BstHHI	GCGC	1 cut(s)	576
BstMAI	GTCTC	2 cut(s)	501, 2759
BstMWI	GCNNNNNNNGC	5 cut(s)	1105, 1175, 1202, 1807, 2361
BstNI	CCWGG	4 cut(s)	261, 518, 554, 2222
BstNSI	RCATGY	2 cut(s)	1635, 2121
BstSCI	CCNGG	6 cut(s)	259, 516, 552, 815, 1379, 2220
BstSFI	CTRYAG	2 cut(s)	320, 783
BstSLI	GKGCMC	1 cut(s)	2601
BstSNI	TACGTA	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	32, 334, 1622, 2686
BstV2I	GAAGAC	3 cut(s)	1550, 1716, 1893
BstX2I	RGATCY	3 cut(s)	232, 1606, 1828
BstXI	CCANNNNNNTGG	3 cut(s)	1898, 2392, 2582
BstYI	RGATCY	3 cut(s)	232, 1606, 1828
Bsu15I	ATCGAT	2 cut(s)	803, 1693
Bsu36I	CCTNAGG	2 cut(s)	1090, 2235
BsuRI	GGCC	3 cut(s)	605, 1379, 1754
BsuTUI	ATCGAT	2 cut(s)	803, 1693
BtgI	CCRYGG	2 cut(s)	747, 2034
BtgZI	GCGATG	1 cut(s)	2769
BtsCI	GGATG	6 cut(s)	1101, 1270, 1345, 1408, 2409, 2539
BtsI	GCAGTG	1 cut(s)	2604
BtsIMutI	CAGTG	4 cut(s)	1019, 1572, 2604, 2680
Cac8I	GCNNGC	5 cut(s)	43, 1110, 1633, 1665, 2123
CaiI	CAGNNNCTG	1 cut(s)	1997
CciI	TCATGA	1 cut(s)	24
CfoI	GCGC	1 cut(s)	576
Cfr13I	GGNCC	7 cut(s)	263, 410, 821, 1146, 1378, 2031, 2333
ClaI	ATCGAT	2 cut(s)	803, 1693
Csp6I	GTAC	7 cut(s)	1483, 1535, 1570, 1968, 2240, 2350, 2641
CviAII	CATG	9 cut(s)	25, 748, 1100, 1232, 1274, 1632, 2035, 2118, 2660
CviQI	GTAC	7 cut(s)	1483, 1535, 1570, 1968, 2240, 2350, 2641
Eam1104I	CTCTTC	3 cut(s)	339, 1637, 2716
EarI	CTCTTC	3 cut(s)	339, 1637, 2716
Eco105I	TACGTA	1 cut(s)	139
Eco130I	CCWWGG	5 cut(s)	747, 1411, 1452, 2034, 2357
Eco147I	AGGCCT	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	1709
Eco47I	GGWCC	6 cut(s)	263, 410, 821, 1146, 2031, 2333
Eco57I	CTGAAG	2 cut(s)	854, 1974
Eco72I	CACGTG	1 cut(s)	1175
Eco81I	CCTNAGG	2 cut(s)	1090, 2235
EcoO109I	RGGNCCY	2 cut(s)	821, 2333
EcoRII	CCWGG	4 cut(s)	259, 516, 552, 2220
EcoT14I	CCWWGG	5 cut(s)	747, 1411, 1452, 2034, 2357
EcoT22I	ATGCAT	3 cut(s)	1101, 1803, 2761
EcoT38I	GRGCYC	1 cut(s)	1709
ErhI	CCWWGG	5 cut(s)	747, 1411, 1452, 2034, 2357
FaeI	CATG	9 cut(s)	28, 751, 1103, 1235, 1277, 1635, 2038, 2121, 2663
FalI	AAGNNNNNCTT	6 cut(s)	687, 719, 690, 722, 2381, 2413
FaqI	GGGAC	2 cut(s)	1639, 2319
FatI	CATG	9 cut(s)	24, 747, 1099, 1231, 1273, 1631, 2034, 2117, 2659
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	4 cut(s)	228, 2206, 2611, 2772
Fnu4HI	GCNGC	5 cut(s)	46, 323, 445, 1636, 2700
FokI	GGATG	6 cut(s)	1108, 1277, 1352, 1415, 2416, 2546
FriOI	GRGCYC	1 cut(s)	1709
Fsp4HI	GCNGC	5 cut(s)	46, 323, 445, 1636, 2700
FspAI	RTGCGCAY	1 cut(s)	575
FspBI	CTAG	7 cut(s)	504, 1880, 2051, 2064, 2093, 2214, 2588
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	5 cut(s)	46, 323, 445, 1636, 2700
GsuI	CTGGAG	3 cut(s)	995, 2243, 2652
HaeIII	GGCC	3 cut(s)	605, 1379, 1754
HapII	CCGG	7 cut(s)	11, 62, 192, 816, 1337, 1381, 2154
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	9 cut(s)	28, 751, 1103, 1235, 1277, 1635, 2038, 2121, 2663
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	1428
HindII	GTYRAC	1 cut(s)	1428
HindIII	AAGCTT	1 cut(s)	1958
HpaII	CCGG	7 cut(s)	11, 62, 192, 816, 1337, 1381, 2154
HphI	GGTGA	6 cut(s)	326, 1115, 1136, 1540, 1556, 2075
Hpy166II	GTNNAC	5 cut(s)	475, 928, 1428, 1572, 2242
Hpy8I	GTNNAC	5 cut(s)	475, 928, 1428, 1572, 2242
Hpy99I	CGWCG	1 cut(s)	1809
HpyAV	CCTTC	7 cut(s)	116, 562, 1512, 1667, 1719, 1831, 2311
HpyCH4III	ACNGT	9 cut(s)	784, 883, 1510, 1528, 1534, 1576, 2477, 2544, 2657
HpyCH4IV	ACGT	5 cut(s)	138, 665, 924, 1174, 1744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1105, 1175, 1202, 1807, 2361
HpySE526I	ACGT	5 cut(s)	138, 665, 924, 1174, 1744
Hsp92II	CATG	9 cut(s)	28, 751, 1103, 1235, 1277, 1635, 2038, 2121, 2663
HspAI	GCGC	1 cut(s)	574
KflI	GGGWCCC	1 cut(s)	2333
Kpn2I	TCCGGA	2 cut(s)	10, 1336
KpnI	GGTACC	1 cut(s)	2644
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	6 cut(s)	556, 670, 1174, 1210, 1601, 2368
Lsp1109I	GCAGC	4 cut(s)	32, 334, 1622, 2686
LweI	GCATC	8 cut(s)	905, 1086, 1690, 1810, 2069, 2200, 2746, 2768
MaeI	CTAG	7 cut(s)	504, 1880, 2051, 2064, 2093, 2214, 2588
MaeII	ACGT	5 cut(s)	138, 665, 924, 1174, 1744
MaeIII	GTNAC	8 cut(s)	778, 1510, 1528, 1576, 1870, 2111, 2216, 2482
MfeI	CAATTG	3 cut(s)	267, 810, 1164
MflI	RGATCY	3 cut(s)	232, 1606, 1828
MhlI	GDGCHC	2 cut(s)	1709, 2601
MlyI	GAGTC	2 cut(s)	1229, 2761
MmeI	TCCRAC	2 cut(s)	648, 1343
Mph1103I	ATGCAT	3 cut(s)	1101, 1803, 2761
MroI	TCCGGA	2 cut(s)	10, 1336
MroXI	GAANNNNTTC	4 cut(s)	702, 730, 1656, 2438
MslI	CAYNNNNRTG	2 cut(s)	2580, 2649
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	7 cut(s)	11, 62, 192, 816, 1337, 1381, 2154
MspR9I	CCNGG	6 cut(s)	261, 518, 554, 817, 1381, 2222
MunI	CAATTG	3 cut(s)	267, 810, 1164
Mva1269I	GAATGC	4 cut(s)	339, 655, 1178, 2309
MvaI	CCWGG	4 cut(s)	261, 518, 554, 2222
MwoI	GCNNNNNNNGC	5 cut(s)	1105, 1175, 1202, 1807, 2361
NciI	CCSGG	2 cut(s)	817, 1381
NcoI	CCATGG	2 cut(s)	747, 2034
NdeI	CATATG	4 cut(s)	228, 2206, 2611, 2772
NlaIII	CATG	9 cut(s)	28, 751, 1103, 1235, 1277, 1635, 2038, 2121, 2663
NlaIV	GGNNCC	7 cut(s)	190, 822, 1494, 1830, 2334, 2335, 2642
NmuCI	GTSAC	3 cut(s)	1528, 2111, 2482
NsbI	TGCGCA	1 cut(s)	575
NsiI	ATGCAT	3 cut(s)	1101, 1803, 2761
NspI	RCATGY	2 cut(s)	1635, 2121
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	1635
PagI	TCATGA	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	2 cut(s)	662, 1690
PctI	GAATGC	4 cut(s)	339, 655, 1178, 2309
PdmI	GAANNNNTTC	4 cut(s)	702, 730, 1656, 2438
PflFI	GACNNNGTC	2 cut(s)	356, 1554
PflMI	CCANNNNNTGG	2 cut(s)	229, 667
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	5 cut(s)	47, 324, 446, 1637, 2701
PleI	GAGTC	2 cut(s)	1229, 2761
PmaCI	CACGTG	1 cut(s)	1175
PmlI	CACGTG	1 cut(s)	1175
PpsI	GAGTC	2 cut(s)	1229, 2761
Ppu21I	YACGTR	2 cut(s)	139, 1175
PpuMI	RGGWCCY	2 cut(s)	821, 2333
PshBI	ATTAAT	1 cut(s)	450
PsiI	TTATAA	2 cut(s)	855, 1224
Psp1406I	AACGTT	1 cut(s)	665
Psp5II	RGGWCCY	2 cut(s)	821, 2333
Psp6I	CCWGG	4 cut(s)	259, 516, 552, 2220
PspCI	CACGTG	1 cut(s)	1175
PspGI	CCWGG	4 cut(s)	259, 516, 552, 2220
PspN4I	GGNNCC	7 cut(s)	190, 822, 1494, 1830, 2334, 2335, 2642
PspPI	GGNCC	7 cut(s)	263, 410, 821, 1146, 1378, 2031, 2333
PspPPI	RGGWCCY	2 cut(s)	821, 2333
PsrI	GAACNNNNNNTAC	2 cut(s)	2624, 2656
PstI	CTGCAG	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	1997
PsuI	RGATCY	3 cut(s)	232, 1606, 1828
PsyI	GACNNNGTC	2 cut(s)	356, 1554
RsaI	GTAC	7 cut(s)	1484, 1536, 1571, 1969, 2241, 2351, 2642
RsaNI	GTAC	7 cut(s)	1483, 1535, 1570, 1968, 2240, 2350, 2641
RseI	CAYNNNNRTG	2 cut(s)	2580, 2649
SapI	GCTCTTC	1 cut(s)	339
SatI	GCNGC	5 cut(s)	46, 323, 445, 1636, 2700
Sau96I	GGNCC	7 cut(s)	263, 410, 821, 1146, 1378, 2031, 2333
SchI	GAGTC	2 cut(s)	1229, 2761
ScrFI	CCNGG	6 cut(s)	261, 518, 554, 817, 1381, 2222
SduI	GDGCHC	2 cut(s)	1709, 2601
SfaNI	GCATC	8 cut(s)	905, 1086, 1690, 1810, 2069, 2200, 2746, 2768
SfcI	CTRYAG	2 cut(s)	320, 783
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	6 cut(s)	263, 410, 821, 1146, 2031, 2333
SmiMI	CAYNNNNRTG	2 cut(s)	2580, 2649
SmlI	CTYRAG	5 cut(s)	160, 369, 488, 707, 2129
SmoI	CTYRAG	5 cut(s)	160, 369, 488, 707, 2129
SnaBI	TACGTA	1 cut(s)	139
SphI	GCATGC	1 cut(s)	1635
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	4 cut(s)	53, 76, 97, 444
SspI	AATATT	1 cut(s)	2164
SspMI	CTAG	7 cut(s)	504, 1880, 2051, 2064, 2093, 2214, 2588
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	6 cut(s)	259, 516, 552, 815, 1379, 2220
StyI	CCWWGG	5 cut(s)	747, 1411, 1452, 2034, 2357
TaaI	ACNGT	9 cut(s)	784, 883, 1510, 1528, 1534, 1576, 2477, 2544, 2657
TaiI	ACGT	5 cut(s)	141, 668, 927, 1177, 1747
TaqII	GACCGA	1 cut(s)	1506
TatI	WGTACW	3 cut(s)	1482, 1534, 1967
TauI	GCSGC	1 cut(s)	447
TscAI	CASTG	4 cut(s)	1019, 1579, 2611, 2680
TseFI	GTSAC	3 cut(s)	1528, 2111, 2482
TseI	GCWGC	4 cut(s)	45, 322, 1635, 2699
Tsp45I	GTSAC	3 cut(s)	1528, 2111, 2482
TspGWI	ACGGA	1 cut(s)	1588
TspRI	CASTG	4 cut(s)	1019, 1579, 2611, 2680
Tth111I	GACNNNGTC	2 cut(s)	356, 1554
Van91I	CCANNNNNTGG	2 cut(s)	229, 667
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	6 cut(s)	263, 410, 821, 1146, 2031, 2333
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	3 cut(s)	457, 741, 1686
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	1635, 2121
XmnI	GAANNNNTTC	4 cut(s)	702, 730, 1656, 2438
XspI	CTAG	7 cut(s)	504, 1880, 2051, 2064, 2093, 2214, 2588
Zsp2I	ATGCAT	3 cut(s)	1101, 1803, 2761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.