Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

11461667 .. 11462299

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTCATGAATACGCCTACCTCTTCAAGTACATCATCATCGGCGACACAGCTGTAGGGAAATCGTGCCTGCTCTTGGAATTCATCGAAAAGAAGTTTCGGCCTGTGTACGATGCCACCATTGGTGTTGAGTTTGGCACTCGCATCATCACTGTTGAGGGTAAACCGATGAAGCTCCAGCTGTGGGACACTGCTGGAGCAGAACGTTTTCAATCCATCACTAGAACTTACTACAGAGGAGCAGCTGGAGCACTTCTGGTTTTCGACGTAACCAGGAGGGAGACCTTTAATAATCTCACGAAATGGCTACATGATGCACGGGAGTATGCCGATCGGAACCTCACAATCATGCTCATAGGGAACAAATGTGACCTTGGTAGTAAAAGGGTTGTCCAGACTGAGGAAGGCGAGCAATTCGCAGAGCAGAATGGACTTTTATACTTGGAAACATCTACAAGAACTGGTGGTAACGTTGAGGAGGCTTTCACGAAAACTACTGAAAAGATTCTTCAAAATATAAATGAAGGCACGATCGATATGTCGACTGGGGCACCTGGAATCAAGATTGGATATGGACTACCACCCCCAGGTGCAGCAGGTGATGTTGCTCAAAGGGGAGGATGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.24

Weight (kDa)

5.81

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 163	2.2e-09	ADP-ribosylation factor family
Ras	PF00071	10 - 170	6.2e-61	Ras family
Roc	PF08477	10 - 124	3.6e-32	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	542
AclI	AACGTT	2 cut(s)	205, 471
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	2 cut(s)	32, 110
AfiI	CCNNNNNNNGG	4 cut(s)	76, 184, 400, 587
AgsI	TTSAA	3 cut(s)	28, 212, 512
AjnI	CCWGG	3 cut(s)	272, 553, 586
AluBI	AGCT	5 cut(s)	53, 175, 181, 245, 630
AluI	AGCT	5 cut(s)	53, 175, 181, 245, 630
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	9, 275
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	242, 593, 627
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	207, 504
AsuHPI	GGTGA	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	254, 605
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	3 cut(s)	274, 555, 588
BcoDI	GTCTC	2 cut(s)	9, 275
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	2 cut(s)	54, 232
BfuAI	ACCTGC	1 cut(s)	587
BisI	GCNGC	3 cut(s)	243, 594, 628
BlsI	GCNGC	3 cut(s)	244, 595, 629
Bme1390I	CCNGG	3 cut(s)	274, 555, 588
BmiI	GGNNCC	2 cut(s)	338, 552
BmrFI	CCNGG	3 cut(s)	274, 555, 588
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	103, 153, 304
BmuI	ACTGGG	1 cut(s)	555
BpmI	CTGGAG	3 cut(s)	161, 216, 267
Bsa29I	ATCGAT	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	373, 586
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 184, 400, 587
Bse1I	ACTGG	2 cut(s)	466, 550
BseBI	CCWGG	3 cut(s)	274, 555, 588
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	373, 586
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	4 cut(s)	76, 184, 400, 587
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	466, 550
BseRI	GAGGAG	2 cut(s)	252, 491
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	2 cut(s)	254, 605
BsgI	GTGCAG	1 cut(s)	612
Bsh1285I	CGRYCG	2 cut(s)	334, 534
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	550
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	2 cut(s)	334, 534
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	4 cut(s)	76, 184, 400, 587
BsmAI	GTCTC	2 cut(s)	9, 275
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	253, 553
Bsp143I	GATC	2 cut(s)	331, 531
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	338, 552
BspMI	ACCTGC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	466, 550
BssECI	CCNNGG	2 cut(s)	373, 586
BssMI	GATC	2 cut(s)	331, 531
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	3 cut(s)	274, 555, 588
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	71, 410
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	626
BstKTI	GATC	2 cut(s)	334, 534
BstMAI	GTCTC	2 cut(s)	9, 275
BstMBI	GATC	2 cut(s)	331, 531
BstMCI	CGRYCG	2 cut(s)	334, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	3 cut(s)	274, 555, 588
BstSCI	CCNGG	3 cut(s)	272, 553, 586
BstSFI	CTRYAG	2 cut(s)	54, 232
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	254, 605
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	150, 189
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	71, 410
CciI	TCATGA	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	31, 109
CviAII	CATG	3 cut(s)	8, 311, 349
CviJI	RGCY	8 cut(s)	53, 103, 175, 181, 245, 307, 482, 630
CviKI_1	RGCY	8 cut(s)	53, 103, 175, 181, 245, 307, 482, 630
CviQI	GTAC	2 cut(s)	31, 109
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	333, 533
DpnII	GATC	2 cut(s)	331, 531
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	3 cut(s)	272, 553, 586
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	11, 314, 352
FaiI	YATR	9 cut(s)	9, 312, 327, 350, 356, 439, 518, 539, 573
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	7, 310, 348
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	3 cut(s)	243, 594, 628
Fsp4HI	GCNGC	3 cut(s)	243, 594, 628
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	3 cut(s)	243, 594, 628
GsuI	CTGGAG	3 cut(s)	161, 216, 267
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	11, 314, 352
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	2 cut(s)	505, 558
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	3 cut(s)	109, 164, 543
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	5 cut(s)	8, 298, 394, 487, 562
Hpy8I	GTNNAC	3 cut(s)	109, 164, 543
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	398, 518
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	205, 267, 471
HpyCH4V	TGCA	3 cut(s)	317, 593, 627
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	3 cut(s)	205, 267, 471
Hsp92II	CATG	3 cut(s)	11, 314, 352
Kzo9I	GATC	2 cut(s)	331, 531
LmnI	GCTCC	4 cut(s)	180, 197, 239, 248
Lsp1109I	GCAGC	2 cut(s)	254, 605
LweI	GCATC	3 cut(s)	103, 153, 304
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	3 cut(s)	205, 267, 471
MaeIII	GTNAC	3 cut(s)	268, 368, 467
MalI	GATC	2 cut(s)	333, 533
MboI	GATC	2 cut(s)	331, 531
MboII	GAAGA	2 cut(s)	16, 500
MhlI	GDGCHC	2 cut(s)	253, 553
MluCI	AATT	2 cut(s)	80, 413
MnlI	CCTC	9 cut(s)	32, 151, 230, 270, 350, 394, 469, 472, 611
MroXI	GAANNNNTTC	2 cut(s)	207, 504
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	3 cut(s)	53, 181, 245
MspR9I	CCNGG	3 cut(s)	274, 555, 588
MvaI	CCWGG	3 cut(s)	274, 555, 588
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	2 cut(s)	331, 531
NlaIII	CATG	3 cut(s)	11, 314, 352
NlaIV	GGNNCC	2 cut(s)	338, 552
NmuCI	GTSAC	1 cut(s)	368
PagI	TCATGA	1 cut(s)	7
PaqCI	CACCTGC	1 cut(s)	587
PdmI	GAANNNNTTC	2 cut(s)	207, 504
PfeI	GAWTC	2 cut(s)	505, 558
PkrI	GCNGC	3 cut(s)	244, 595, 629
Ple19I	CGATCG	2 cut(s)	334, 534
Psp1406I	AACGTT	2 cut(s)	205, 471
Psp6I	CCWGG	3 cut(s)	272, 553, 586
PspGI	CCWGG	3 cut(s)	272, 553, 586
PspN4I	GGNNCC	2 cut(s)	338, 552
PvuI	CGATCG	2 cut(s)	334, 534
PvuII	CAGCTG	3 cut(s)	53, 181, 245
RsaI	GTAC	2 cut(s)	32, 110
RsaNI	GTAC	2 cut(s)	31, 109
RseI	CAYNNNNRTG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	243, 594, 628
Sau3AI	GATC	2 cut(s)	331, 531
ScrFI	CCNGG	3 cut(s)	274, 555, 588
SduI	GDGCHC	2 cut(s)	253, 553
SfaNI	GCATC	3 cut(s)	103, 153, 304
SfcI	CTRYAG	2 cut(s)	54, 232
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	80, 413
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	272, 553, 586
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	208, 270, 474
TaqI	TCGA	4 cut(s)	87, 264, 534, 542
TasI	AATT	2 cut(s)	80, 413
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	505, 558
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	157, 196
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	242, 593, 627
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	4 cut(s)	24, 73, 185, 537
TspRI	CASTG	2 cut(s)	157, 196
XapI	RAATTY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	542
XmnI	GAANNNNTTC	2 cut(s)	207, 504
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.