Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

48876638 .. 48877279

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTTACGCCTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCTTGAATTTCACAGACAAGAGGTTTCGGCCCGAGCATGATGTCACCATTGGTGTTGAGTTTGGCACTCGCATGGTCACTATTGAGGGTAAACCCATCAAGCTCAATATATGGGACACTGCTGGACAAGAAGCTTTTAGATCCATCACTAGATCTTTCTACAGAGGAGCAGCTGGAGCACTTCTGGTTTTCGACGTAACCAGGAGGGAGACATTTAGAAATCTCACGAAATGGCTAGAGGATACAAGGCAGCATGCAAATCGTAACATCACAATCATGCTCATAGGGAACAAGTGTGATCTTGCTCATAAAAGGGATGTCATAAGAGAGGAAGGGGAGCAATTCGCAAAGGAGAATGGACTTCTATACTTGGAAACATCGATATCTTCAAAAACTGCTGATAACGTTGGGGAGGCTTTCATAAAAACTACTGCAAAGATTCTTCAAAATATAAGTGAAGGCGTGATCAATATGTCGAATGAGACGCCAGGAATCACGATTGGATATGGACTACCCCAAGGTCCATCAGGTGCAAGTGATGGAGTTGTTGCTCGATGGGGTAGATGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

214

Amino Acids

23.71

Weight (kDa)

8.65

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 126	1.5e-11	ADP-ribosylation factor family
Ras	PF00071	8 - 170	8.6e-59	Ras family
Roc	PF08477	8 - 122	8.8e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	10 - 114	8.7e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	471
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	22, 73, 456, 512
AjnI	CCWGG	2 cut(s)	266, 553
AluBI	AGCT	4 cut(s)	169, 200, 239, 639
AluI	AGCT	4 cut(s)	169, 200, 239, 639
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	269, 542
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	236, 316, 636
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	96, 587
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	248, 328
BccI	CCATC	5 cut(s)	170, 218, 598, 599, 615
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	268, 555
BciVI	GTATCC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	269, 542
BfaI	CTAG	2 cut(s)	216, 302
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	3 cut(s)	237, 317, 637
BlsI	GCNGC	3 cut(s)	238, 318, 638
Bme1390I	CCNGG	2 cut(s)	268, 555
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	96, 587
BmrFI	CCNGG	2 cut(s)	268, 555
BpmI	CTGGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	268, 555
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	248, 328
BshFI	GGCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	269, 542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	206, 218, 364, 531
BspANI	GGCC	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	446
BspPI	GGATC	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	4 cut(s)	206, 218, 364, 531
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	268, 555
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	65, 321
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	209, 221, 367, 534
BstMAI	GTCTC	2 cut(s)	269, 542
BstMBI	GATC	4 cut(s)	206, 218, 364, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	2 cut(s)	268, 555
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	266, 553
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	248, 328
BstX2I	RGATCY	2 cut(s)	206, 218
BstYI	RGATCY	2 cut(s)	206, 218
Bsu15I	ATCGAT	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	97
BsuTUI	ATCGAT	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	65, 321
Cfr13I	GGNCC	2 cut(s)	96, 587
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	104, 139, 320, 343
CviJI	RGCY	7 cut(s)	97, 169, 200, 239, 301, 482, 639
CviKI_1	RGCY	7 cut(s)	97, 169, 200, 239, 301, 482, 639
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	4 cut(s)	208, 220, 366, 533
DpnII	GATC	4 cut(s)	206, 218, 364, 531
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	266, 553
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	4 cut(s)	107, 142, 323, 346
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	103, 138, 319, 342
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	237, 317, 637
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	237, 317, 637
FspBI	CTAG	2 cut(s)	216, 302
GluI	GCNGC	3 cut(s)	237, 317, 637
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	107, 142, 323, 346
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	2 cut(s)	505, 558
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	70, 292, 562
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	392, 518
HpyCH4IV	ACGT	2 cut(s)	261, 471
HpyCH4V	TGCA	4 cut(s)	323, 500, 599, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	261, 471
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	4 cut(s)	107, 142, 323, 346
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	206, 218, 364, 531
LmnI	GCTCC	3 cut(s)	233, 242, 403
Lsp1109I	GCAGC	2 cut(s)	248, 328
MaeI	CTAG	2 cut(s)	216, 302
MaeII	ACGT	2 cut(s)	261, 471
MaeIII	GTNAC	4 cut(s)	109, 142, 262, 329
MalI	GATC	4 cut(s)	208, 220, 366, 533
MboI	GATC	4 cut(s)	206, 218, 364, 531
MboII	GAAGA	3 cut(s)	10, 444, 500
MflI	RGATCY	2 cut(s)	206, 218
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	2 cut(s)	73, 407
MnlI	CCTC	8 cut(s)	26, 81, 145, 224, 264, 298, 388, 472
MslI	CAYNNNNRTG	2 cut(s)	137, 341
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	268, 555
MvaI	CCWGG	2 cut(s)	268, 555
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	4 cut(s)	206, 218, 364, 531
NlaIII	CATG	4 cut(s)	107, 142, 323, 346
NmuCI	GTSAC	2 cut(s)	109, 142
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	505, 558
PkrI	GCNGC	3 cut(s)	238, 318, 638
Psp1406I	AACGTT	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	266, 553
PspGI	CCWGG	2 cut(s)	266, 553
PspPI	GGNCC	2 cut(s)	96, 587
PsuI	RGATCY	2 cut(s)	206, 218
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	137, 341
SatI	GCNGC	3 cut(s)	237, 317, 637
Sau3AI	GATC	4 cut(s)	206, 218, 364, 531
Sau96I	GGNCC	2 cut(s)	96, 587
ScrFI	CCNGG	2 cut(s)	268, 555
SduI	GDGCHC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	2 cut(s)	137, 341
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	73, 407
SspMI	CTAG	2 cut(s)	216, 302
StyD4I	CCNGG	2 cut(s)	266, 553
StyI	CCWWGG	1 cut(s)	583
TaiI	ACGT	2 cut(s)	264, 474
TaqI	TCGA	4 cut(s)	258, 446, 542, 619
TasI	AATT	2 cut(s)	73, 407
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	505, 558
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	109, 142
TseI	GCWGC	3 cut(s)	236, 316, 636
Tsp45I	GTSAC	2 cut(s)	109, 142
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	216, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.