Rorug02G0571100

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004283
Physical Location & Seq
Forward (+)
69735394 .. 69736776
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0571100.1

Sequence Viewer

Length: 1383 bp
ATGGCGCAACCAAACTCGGTGGAAGTTGTTAAGGTTTGCAGGGTGACTCCACACCAGAGTTCACGGGACTTCGCCGCACCAGAGGATCAGTACTCCCTTCCTCTAACCTTCTTTGACTTGGTCTGGCTAAGGTTCCCAACAATTCAACGCGTTTTCTTCTTCGAAACATCTTCTTGCCCGAATTTCATATTTTCCAAGCTCAAAACCTCACTCTCTCACACTCTCCAACACTTTCTGCCCCTCGCCGGAAATCTCACTTGGCCCCAACACTCCCCCACACCCGTCCTCCGGTATGTCAAAGGTGACGCCGTTTCGCTCACCGTAGCCGAGTACTCTAATCCTGAAGACTTCCACCACCTCTCCGGCAGCCAATTTATTGAAGCCGAAAAGTACTATCCTCTTGTTCCTCAACTTGAAGCTTCTGCACCGATAGCTTTGCAAGTCACTCTGTTTCCCAACAACGGCTTTTCCGTAGGCACAATCATGCACCACGCCATCATGGACGGCAAATCTTACACCTCGTTCGTTAAGTCATGGGCTCGGATATGCAAACATGTGGCTGGATCCGGGTCCTCTTGTACCGTTTCGTTACCGGAACAGCTACAACCATTTTATGACAGAACCGTCATTCAGGACCCGGCCGGGCTCGGAGAACTCTACTCAAGCCAATACCTAGATGAACACGGCCCCAACAACAGAAGCGTAACGCCTTCGAATTCCCTTCATTTTGCAGTGGATGTTAAACCAGACTCGATCAGAGGTACCTTCGAGCTCACAAGAGCGAAAATACAAGCACTCAGAGAGCATGTGATAAAGACTACAATGGCTTCTGATTCTTCACCACTTCATCTGTCAACTTTTTCTTTGACATGCGCGTTCTGTTGGGTTTGCTCAGTCAAGGCTCAAGAAATCAAAGGCGGTAAAACCGCTCTGGTTCTTGCGGTGGACGCTAGGGCTCGCTTGGACCCTCCGATACCCGCAACGTATTTTGGGAACTGCATTATGGGTCGTGTAGCAATTGCAGAAACAAAAGGGCTATTGGGAGAAGATGGCTTGGTTGTGGCATTAAGTGCAATTACTGAAGCTTTGAAGAGTTTGGATAAAAATGGGATCTTGAATGGGGCAGAGTCGTGGGTGTCAAACTTCATTGATTTTTCACAGTATGAGAGAGTGTTTTCGGTGGCGGGTTCGCAACGGTTTGAGGTTTATGATACTGATTTCGGATGGGGGAGACCGAAGAGGACTGAGGTGGTTTCCATAGATAAGACAGGAGCCTTCTCTCTTTCAGCTAGCAACAATGACGGTGGAGCTGTTGAGGTTGGGTTGGTTCTGAAGAAAGTGTATATGAAGGCTTTTGCTTCTTTATTTGCTGATGCAATTTAA

Protein Analysis

460

Amino Acids

50.51

Weight (kDa)

6.36

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 27 - 454 7.1e-49 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
Acc65I GGTACC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 761
AccBSI CCGCTC 1 cut(s) 929
AccII CGCG 2 cut(s) 150, 875
AciI CCGC 6 cut(s) 75, 918, 927, 941, 978, 1184
AclWI GGATC 4 cut(s) 93, 558, 571, 1118
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 2 cut(s) 181, 715
AcuI CTGAAG 3 cut(s) 363, 1101, 1352
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 5 cut(s) 92, 332, 392, 580, 763
AfiI CCNNNNNNNGG 3 cut(s) 245, 288, 461
AflIII ACRYGT 2 cut(s) 148, 553
AgsI TTSAA 5 cut(s) 146, 380, 416, 1090, 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 241, 273
AluBI AGCT 8 cut(s) 199, 419, 434, 601, 772, 1085, 1289, 1310
AluI AGCT 8 cut(s) 199, 419, 434, 601, 772, 1085, 1289, 1310
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 1 cut(s) 1225
AlwI GGATC 4 cut(s) 93, 558, 571, 1118
AoxI GGCC 3 cut(s) 260, 639, 685
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 2 cut(s) 181, 715
Asp718I GGTACC 1 cut(s) 761
AspLEI GCGC 2 cut(s) 7, 875
AspS9I GGNCC 5 cut(s) 261, 570, 634, 686, 964
AsuC2I CCSGG 3 cut(s) 568, 638, 643
AsuHPI GGTGA 4 cut(s) 55, 310, 314, 831
AsuII TTCGAA 2 cut(s) 162, 713
AsuNHI GCTAGC 1 cut(s) 1289
AvaII GGWCC 3 cut(s) 570, 634, 964
BamHI GGATCC 1 cut(s) 563
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 4 cut(s) 541, 648, 774, 958
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 1 cut(s) 378
BccI CCATC 3 cut(s) 503, 1043, 1218
BceAI ACGGC 4 cut(s) 293, 478, 520, 700
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BcnI CCSGG 3 cut(s) 568, 638, 643
BcoDI GTCTC 1 cut(s) 1225
BfaI CTAG 3 cut(s) 674, 951, 1290
BisI GCNGC 2 cut(s) 75, 367
BlsI GCNGC 2 cut(s) 76, 368
BmcAI AGTACT 3 cut(s) 92, 332, 392
Bme1390I CCNGG 3 cut(s) 568, 638, 643
Bme18I GGWCC 3 cut(s) 570, 634, 964
BmgT120I GGNCC 5 cut(s) 261, 570, 634, 686, 964
BmiI GGNNCC 9 cut(s) 134, 263, 565, 571, 636, 688, 763, 966, 1273
BmrFI CCNGG 3 cut(s) 568, 638, 643
BmsI GCATC 1 cut(s) 1363
BmtI GCTAGC 1 cut(s) 1293
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 2 cut(s) 162, 713
BpuEI CTTGAG 2 cut(s) 646, 888
BpuMI CCSGG 3 cut(s) 568, 638, 643
BsaHI GRCGYC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 1225
BsaWI WCCGGW 2 cut(s) 288, 592
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 288, 461
BseGI GGATG 2 cut(s) 742, 1229
BseLI CCNNNNNNNGG 3 cut(s) 245, 288, 461
BseMII CTCAG 3 cut(s) 811, 906, 1236
BseX3I CGGCCG 1 cut(s) 639
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 2 cut(s) 150, 875
Bsh1285I CGRYCG 1 cut(s) 642
BshFI GGCC 3 cut(s) 262, 641, 687
BshNI GGYRCC 1 cut(s) 761
BsiEI CGRYCG 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 774
BsiSI CCGG 7 cut(s) 246, 289, 363, 567, 593, 638, 642
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 245, 288, 461
BsmAI GTCTC 1 cut(s) 1225
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 3 cut(s) 262, 641, 687
Bso31I GGTCTC 1 cut(s) 1225
Bsp119I TTCGAA 2 cut(s) 162, 713
Bsp1286I GDGCHC 4 cut(s) 541, 648, 774, 958
Bsp143I GATC 4 cut(s) 85, 563, 753, 1110
BspACI CCGC 6 cut(s) 75, 918, 927, 941, 978, 1184
BspANI GGCC 3 cut(s) 262, 641, 687
BspCNI CTCAG 3 cut(s) 810, 905, 1237
BspFNI CGCG 2 cut(s) 150, 875
BspLI GGNNCC 9 cut(s) 134, 263, 565, 571, 636, 688, 763, 966, 1273
BspOI GCTAGC 1 cut(s) 1293
BspPI GGATC 4 cut(s) 93, 558, 571, 1118
BspT104I TTCGAA 2 cut(s) 162, 713
BspT107I GGYRCC 1 cut(s) 761
BspTNI GGTCTC 1 cut(s) 1225
BsrBI CCGCTC 1 cut(s) 929
BssMI GATC 4 cut(s) 85, 563, 753, 1110
BssNI GRCGYC 1 cut(s) 306
Bst4CI ACNGT 6 cut(s) 322, 583, 625, 1161, 1197, 1304
Bst6I CTCTTC 2 cut(s) 1085, 1232
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 1070
BstBI TTCGAA 2 cut(s) 162, 713
BstC8I GCNNGC 2 cut(s) 958, 1291
BstDEI CTNAG 4 cut(s) 128, 797, 892, 1245
BstF5I GGATG 2 cut(s) 742, 1229
BstFNI CGCG 2 cut(s) 150, 875
BstHHI GCGC 2 cut(s) 7, 875
BstKTI GATC 4 cut(s) 88, 566, 756, 1113
BstMAI GTCTC 1 cut(s) 1225
BstMBI GATC 4 cut(s) 85, 563, 753, 1110
BstMCI CGRYCG 1 cut(s) 642
BstMWI GCNNNNNNNGC 3 cut(s) 431, 947, 1070
BstNSI RCATGY 3 cut(s) 557, 809, 873
BstSCI CCNGG 3 cut(s) 566, 636, 641
BstUI CGCG 2 cut(s) 150, 875
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 563, 1110
BstYI RGATCY 2 cut(s) 563, 1110
BstZI CGGCCG 1 cut(s) 639
BsuRI GGCC 3 cut(s) 262, 641, 687
BtsCI GGATG 2 cut(s) 742, 1229
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 958, 1291
CfoI GCGC 2 cut(s) 7, 875
Cfr13I GGNCC 5 cut(s) 261, 570, 634, 686, 964
CseI GACGC 2 cut(s) 314, 956
Csp6I GTAC 5 cut(s) 91, 331, 391, 579, 762
CspCI CAANNNNNGTGG 3 cut(s) 35, 1285, 1320
CviAII CATG 6 cut(s) 484, 499, 534, 554, 806, 870
CviQI GTAC 5 cut(s) 91, 331, 391, 579, 762
DdeI CTNAG 4 cut(s) 128, 797, 892, 1245
DpnI GATC 4 cut(s) 87, 565, 755, 1112
DpnII GATC 4 cut(s) 85, 563, 753, 1110
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 639
EagI CGGCCG 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 1085, 1232
EarI CTCTTC 2 cut(s) 1085, 1232
Ecl136II GAGCTC 1 cut(s) 772
EclXI CGGCCG 1 cut(s) 639
Eco24I GRGCYC 4 cut(s) 541, 648, 774, 958
Eco31I GGTCTC 1 cut(s) 1225
Eco47I GGWCC 3 cut(s) 570, 634, 964
Eco52I CGGCCG 1 cut(s) 639
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 3 cut(s) 363, 1101, 1352
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 2 cut(s) 570, 634
EcoRI GAATTC 1 cut(s) 715
EcoT38I GRGCYC 4 cut(s) 541, 648, 774, 958
FaeI CATG 6 cut(s) 487, 502, 537, 557, 809, 873
FaqI GGGAC 1 cut(s) 80
FatI CATG 6 cut(s) 483, 498, 533, 553, 805, 869
FauI CCCGC 2 cut(s) 985, 1177
Fnu4HI GCNGC 2 cut(s) 75, 367
FokI GGATG 2 cut(s) 749, 1236
FriOI GRGCYC 4 cut(s) 541, 648, 774, 958
Fsp4HI GCNGC 2 cut(s) 75, 367
FspBI CTAG 3 cut(s) 674, 951, 1290
GlaI GCGC 2 cut(s) 6, 874
GluI GCNGC 2 cut(s) 75, 367
HaeIII GGCC 3 cut(s) 262, 641, 687
HapII CCGG 7 cut(s) 246, 289, 363, 567, 593, 638, 642
HgaI GACGC 2 cut(s) 314, 956
HhaI GCGC 2 cut(s) 7, 875
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 6 cut(s) 487, 502, 537, 557, 809, 873
Hin6I GCGC 2 cut(s) 5, 873
HinP1I GCGC 2 cut(s) 5, 873
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 2 cut(s) 417, 1083
HinfI GANTC 4 cut(s) 46, 749, 833, 1127
HpaII CCGG 7 cut(s) 246, 289, 363, 567, 593, 638, 642
HphI GGTGA 4 cut(s) 55, 310, 314, 831
Hpy166II GTNNAC 3 cut(s) 62, 855, 946
Hpy188I TCNGA 8 cut(s) 543, 650, 758, 800, 832, 972, 1223, 1332
Hpy188III TCNNGA 4 cut(s) 341, 632, 905, 1114
Hpy8I GTNNAC 3 cut(s) 62, 855, 946
HpyAV CCTTC 7 cut(s) 107, 118, 720, 731, 775, 1285, 1342
HpyCH4III ACNGT 6 cut(s) 322, 583, 625, 1161, 1197, 1304
HpyCH4IV ACGT 1 cut(s) 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 947, 1070
HpyF3I CTNAG 4 cut(s) 128, 797, 892, 1245
HpySE526I ACGT 1 cut(s) 983
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 6 cut(s) 487, 502, 537, 557, 809, 873
HspAI GCGC 2 cut(s) 5, 873
KpnI GGTACC 1 cut(s) 765
Kzo9I GATC 4 cut(s) 85, 563, 753, 1110
LmnI GCTCC 2 cut(s) 1271, 1307
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 1 cut(s) 1363
MaeI CTAG 3 cut(s) 674, 951, 1290
MaeII ACGT 1 cut(s) 983
MaeIII GTNAC 5 cut(s) 43, 302, 442, 588, 703
MalI GATC 4 cut(s) 87, 565, 755, 1112
MbiI CCGCTC 1 cut(s) 929
MboI GATC 4 cut(s) 85, 563, 753, 1110
MboII GAAGA 9 cut(s) 148, 151, 162, 356, 828, 1058, 1102, 1249, 1345
MfeI CAATTG 1 cut(s) 1017
MflI RGATCY 2 cut(s) 563, 1110
MhlI GDGCHC 4 cut(s) 541, 648, 774, 958
MluCI AATT 7 cut(s) 141, 181, 371, 715, 1017, 1074, 1377
MluI ACGCGT 1 cut(s) 148
MlyI GAGTC 3 cut(s) 40, 743, 1136
MmeI TCCRAC 1 cut(s) 250
MseI TTAA 5 cut(s) 30, 528, 741, 1067, 1381
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 7 cut(s) 246, 289, 363, 567, 593, 638, 642
MspR9I CCNGG 3 cut(s) 568, 638, 643
MunI CAATTG 1 cut(s) 1017
MvnI CGCG 2 cut(s) 150, 875
MwoI GCNNNNNNNGC 3 cut(s) 431, 947, 1070
NciI CCSGG 3 cut(s) 568, 638, 643
NdeII GATC 4 cut(s) 85, 563, 753, 1110
NheI GCTAGC 1 cut(s) 1289
NlaIII CATG 6 cut(s) 487, 502, 537, 557, 809, 873
NlaIV GGNNCC 9 cut(s) 134, 263, 565, 571, 636, 688, 763, 966, 1273
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 3 cut(s) 43, 302, 442
NspI RCATGY 3 cut(s) 557, 809, 873
NspV TTCGAA 2 cut(s) 162, 713
PciI ACATGT 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfeI GAWTC 1 cut(s) 833
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 76, 368
PleI GAGTC 3 cut(s) 40, 743, 1135
PpsI GAGTC 3 cut(s) 40, 743, 1135
PpuMI RGGWCCY 2 cut(s) 570, 634
PscI ACATGT 1 cut(s) 553
Psp124BI GAGCTC 1 cut(s) 774
Psp5II RGGWCCY 2 cut(s) 570, 634
PspN4I GGNNCC 9 cut(s) 134, 263, 565, 571, 636, 688, 763, 966, 1273
PspPI GGNCC 5 cut(s) 261, 570, 634, 686, 964
PspPPI RGGWCCY 2 cut(s) 570, 634
PsuI RGATCY 2 cut(s) 563, 1110
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 5 cut(s) 92, 332, 392, 580, 763
RsaNI GTAC 5 cut(s) 91, 331, 391, 579, 762
RseI CAYNNNNRTG 1 cut(s) 482
SacI GAGCTC 1 cut(s) 774
SaqAI TTAA 5 cut(s) 30, 528, 741, 1067, 1381
SatI GCNGC 2 cut(s) 75, 367
Sau3AI GATC 4 cut(s) 85, 563, 753, 1110
Sau96I GGNCC 5 cut(s) 261, 570, 634, 686, 964
ScaI AGTACT 3 cut(s) 92, 332, 392
SchI GAGTC 3 cut(s) 40, 743, 1136
ScrFI CCNGG 3 cut(s) 568, 638, 643
SduI GDGCHC 4 cut(s) 541, 648, 774, 958
SfaNI GCATC 1 cut(s) 1363
SfuI TTCGAA 2 cut(s) 162, 713
SinI GGWCC 3 cut(s) 570, 634, 964
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 661, 903
SmoI CTYRAG 2 cut(s) 661, 903
Sse9I AATT 7 cut(s) 141, 181, 371, 715, 1017, 1074, 1377
SsiI CCGC 6 cut(s) 75, 918, 927, 941, 978, 1184
SspMI CTAG 3 cut(s) 674, 951, 1290
SstI GAGCTC 1 cut(s) 774
StyD4I CCNGG 3 cut(s) 566, 636, 641
TaaI ACNGT 6 cut(s) 322, 583, 625, 1161, 1197, 1304
TaiI ACGT 1 cut(s) 986
TaqI TCGA 4 cut(s) 162, 713, 752, 768
TaqII GACCGA 1 cut(s) 1249
TasI AATT 7 cut(s) 141, 181, 371, 715, 1017, 1074, 1377
TatI WGTACW 3 cut(s) 90, 330, 390
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 833
Tru1I TTAA 5 cut(s) 30, 528, 741, 1067, 1381
Tru9I TTAA 5 cut(s) 30, 528, 741, 1067, 1381
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 3 cut(s) 43, 302, 442
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 3 cut(s) 43, 302, 442
TspDTI ATGAA 6 cut(s) 175, 693, 713, 836, 1135, 1361
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 738
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 3 cut(s) 570, 634, 964
XapI RAATTY 2 cut(s) 181, 715
XceI RCATGY 3 cut(s) 557, 809, 873
XspI CTAG 3 cut(s) 674, 951, 1290
ZrmI AGTACT 3 cut(s) 92, 332, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.