Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

21907894 .. 21909766

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCTTACGCCTACCTCTCCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCTTAAATTTCACAGACAAGAGGTTTCGGCCTGAGCATGATGCCACCATTGGTGTCGAGTTTGGCACTCGCATGGTCACTATTGAGGCAGCTGGAGCGCTTCTGGTTTTCGACGTAACCAGGAGGGAGACATTTAGAAATCTCACGAAATGGCTCGAGGATACAAGCCAGCATGCAAATCGTAATATCACAATCATGCTCATAGGGAACAAGTGTGATCTTGCTCGGGTTGTCAGAGAGGAAGGGGAGCAATTCGCAAAGGAGAATGGACTTCTATACTTGGAAACATCGATATTTTCAAAAACTGCTCATAACGTTGGGGAGGCTTTCATAAAAACTACCGCAAAGACGCCTGGAATCACGATTGGACATGGACTACCCGAAGGTCCATCAGGTGCAAATGATGGAGTTGTTGCTCGATGGGGTAGATGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

168

Amino Acids

18.5

Weight (kDa)

7.69

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 51	2.6e-11	Ras family
Roc	PF08477	8 - 50	6.3e-09	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	47 - 137	5.1e-22	Ras family
Roc	PF08477	49 - 95	1e-05	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	408
AclI	AACGTT	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	366
AjnI	CCWGG	2 cut(s)	185, 418
AluBI	AGCT	2 cut(s)	158, 504
AluI	AGCT	2 cut(s)	158, 504
Alw26I	GTCTC	1 cut(s)	188
Ama87I	CYCGRG	2 cut(s)	221, 291
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	155, 501
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	452
AvaI	CYCGRG	2 cut(s)	221, 291
AvaII	GGWCC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	3 cut(s)	463, 464, 480
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	2 cut(s)	187, 420
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	156, 502
BlsI	GCNGC	2 cut(s)	157, 503
Bme1390I	CCNGG	2 cut(s)	187, 420
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	2 cut(s)	221, 291
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	187, 420
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	187, 420
BseCI	ATCGAT	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	356
BsiHKCI	CYCGRG	2 cut(s)	221, 291
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	2 cut(s)	221, 291
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	91
BspDI	ATCGAT	1 cut(s)	356
BssMI	GATC	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	187, 420
BstACI	GRCGYC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	65, 236, 240
BstDEI	CTNAG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	187, 420
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	185, 418
BstV1I	GCAGC	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	97
BsuTUI	ATCGAT	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	65, 236, 240
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	356
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	104, 139, 239, 262, 437
CviJI	RGCY	6 cut(s)	97, 158, 220, 234, 392, 504
CviKI_1	RGCY	6 cut(s)	97, 158, 220, 234, 392, 504
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	221, 291
EcoRII	CCWGG	2 cut(s)	185, 418
FaeI	CATG	5 cut(s)	107, 142, 242, 265, 440
FaiI	YATR	9 cut(s)	105, 140, 240, 263, 269, 343, 378, 398, 438
FatI	CATG	5 cut(s)	103, 138, 238, 261, 436
Fnu4HI	GCNGC	2 cut(s)	156, 502
Fsp4HI	GCNGC	2 cut(s)	156, 502
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	156, 502
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	5 cut(s)	107, 142, 242, 265, 440
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	423
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	211, 427
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	302, 443
HpyCH4IV	ACGT	2 cut(s)	180, 381
HpyCH4V	TGCA	3 cut(s)	242, 464, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	2 cut(s)	180, 381
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	5 cut(s)	107, 142, 242, 265, 440
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	161, 313
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	2 cut(s)	180, 381
MaeIII	GTNAC	2 cut(s)	142, 181
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MluCI	AATT	2 cut(s)	73, 317
MnlI	CCTC	7 cut(s)	26, 81, 145, 183, 217, 298, 382
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	137, 260
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	187, 420
MvaI	CCWGG	2 cut(s)	187, 420
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	5 cut(s)	107, 142, 242, 265, 440
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	423
PkrI	GCNGC	2 cut(s)	157, 503
Psp1406I	AACGTT	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	185, 418
PspGI	CCWGG	2 cut(s)	185, 418
PspPI	GGNCC	1 cut(s)	452
PspXI	VCTCGAGB	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	137, 260
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	156, 502
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	187, 420
SetI	ASST	9 cut(s)	18, 49, 92, 160, 183, 384, 454, 463, 506
SfaNI	GCATC	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	137, 260
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	73, 317
SsiI	CCGC	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	185, 418
TaiI	ACGT	2 cut(s)	183, 384
TaqI	TCGA	5 cut(s)	123, 177, 222, 356, 484
TasI	AATT	2 cut(s)	73, 317
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	155, 501
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.