Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002918.1

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

116214 .. 116633

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002918.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgatgccaccattggtgtcgagtttggcactcgcatggtcactattgagggtaaacccatcaagctcaatatatgagacacgtactgctggacaagaagcttttagatccatcactatatctttctacagaggagcagctggagcgcttctggttttcgacgtaaccaggagggagacatttagaaatctcacgaaatggctagaggatacaaggcagcatgcaaatcgtaatatcacaatcatgctcatagggaacaagtgtgatcttgctcgggttgtcagaagagaggaaggggagcaattcgcaaaggagaatggacttctatacttggaaacatcgatatcttcaaaaactgctcataacgttggggaggctttcataaaaactactgcaaagattcttcaaaatataagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

139

Amino Acids

15.63

Weight (kDa)

9.72

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	85
AfeI	AGCGCT	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	351, 407
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	66, 101, 140
AluI	AGCT	3 cut(s)	66, 101, 140
Alw26I	GTCTC	2 cut(s)	71, 170
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	137, 217
AspLEI	GCGC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	149, 229
BccI	CCATC	2 cut(s)	67, 119
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	169
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	71, 170
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	138, 218
BlsI	GCNGC	2 cut(s)	139, 219
Bme1390I	CCNGG	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	149, 229
BshVI	ATCGAT	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	71, 170
BsoBI	CYCGRG	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	107, 265
BspDI	ATCGAT	1 cut(s)	341
BspPI	GGATC	1 cut(s)	102
BssMI	GATC	2 cut(s)	107, 265
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	110, 268
BstMAI	GTCTC	2 cut(s)	71, 170
BstMBI	GATC	2 cut(s)	107, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	149, 229
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	84
CviAII	CATG	3 cut(s)	36, 221, 244
CviJI	RGCY	5 cut(s)	66, 101, 140, 202, 377
CviKI_1	RGCY	5 cut(s)	66, 101, 140, 202, 377
CviQI	GTAC	1 cut(s)	84
DpnI	GATC	2 cut(s)	109, 267
DpnII	GATC	2 cut(s)	107, 265
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco32I	GATATC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	167
EcoRV	GATATC	1 cut(s)	345
FaeI	CATG	3 cut(s)	39, 224, 247
FatI	CATG	3 cut(s)	35, 220, 243
Fnu4HI	GCNGC	2 cut(s)	138, 218
Fsp4HI	GCNGC	2 cut(s)	138, 218
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	138, 218
GsuI	CTGGAG	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	149
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	39, 224, 247
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	287
HpyCH4IV	ACGT	3 cut(s)	82, 162, 366
HpyCH4V	TGCA	2 cut(s)	224, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	3 cut(s)	82, 162, 366
Hsp92II	CATG	3 cut(s)	39, 224, 247
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	107, 265
LmnI	GCTCC	3 cut(s)	134, 143, 298
LpnPI	CCDG	5 cut(s)	75, 126, 137, 154, 181
Lsp1109I	GCAGC	2 cut(s)	149, 229
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	3 cut(s)	82, 162, 366
MaeIII	GTNAC	2 cut(s)	39, 163
MalI	GATC	2 cut(s)	109, 267
MboI	GATC	2 cut(s)	107, 265
MboII	GAAGA	3 cut(s)	297, 339, 395
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	1 cut(s)	302
MnlI	CCTC	6 cut(s)	42, 125, 165, 199, 283, 367
MslI	CAYNNNNRTG	2 cut(s)	34, 242
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	2 cut(s)	107, 265
NlaIII	CATG	3 cut(s)	39, 224, 247
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	139, 219
Ppu21I	YACGTR	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	34, 242
SatI	GCNGC	2 cut(s)	138, 218
Sau3AI	GATC	2 cut(s)	107, 265
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	6 cut(s)	68, 85, 103, 142, 165, 369
SfcI	CTRYAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	34, 242
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	167
TaiI	ACGT	3 cut(s)	85, 165, 369
TaqI	TCGA	3 cut(s)	20, 159, 341
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	137, 217
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.