Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

21259588 .. 21260097

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATGCCACCATTGGTGTCGAGTTTGGCACTCGCATGGTCACTATTGAGGGTAAACCCATCACGCTCAATATATGGGACACTGCTGGACAAGAAGGCTCTTAGATCCATCACTATATCTTTCTACAGAGGAGCAGCTGGAGCGCTTCTGGTTTTCGACGTAACCAGGAGGGAGACATTTAGAAATCTCACGAAATGGCTCGAGGATACAAGCCAGCATGCAAATCGTAATATCACAATCATGCTCATAGGGAACAAGTGTGATCTTGCTCGGGTTGTCAGAGAGGAAGGGGAGCAATTCGCAAAGGAGAATGGACTTCTATACTTGGAAACATCGATATTTTCAAAAACTGCTCATAACGTTGGGGAGGCTTTCATAAAAACTACCGCAAAGGTTCTTCAAAATATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

137

Amino Acids

15.37

Weight (kDa)

9.77

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	33 - 88	7.3e-09	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	35 - 133	2.4e-25	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	387
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	99
AfeI	AGCGCT	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	345, 401
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	99
Ama87I	CYCGRG	2 cut(s)	200, 270
Aor51HI	AGCGCT	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	200, 270
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	2 cut(s)	67, 116
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	124
BfoI	RGCGCY	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	200, 270
BmrFI	CCNGG	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	335
BsiHKCI	CYCGRG	2 cut(s)	200, 270
BslFI	GGGAC	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	91
BsoBI	CYCGRG	2 cut(s)	200, 270
Bsp143I	GATC	2 cut(s)	104, 262
BspACI	CCGC	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	335
BspPI	GGATC	1 cut(s)	99
BssMI	GATC	2 cut(s)	104, 262
Bst2UI	CCWGG	1 cut(s)	166
BstC8I	GCNNGC	2 cut(s)	215, 219
BstDEI	CTNAG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	107, 265
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	104, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	335
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	215, 219
CfoI	GCGC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	335
CviAII	CATG	3 cut(s)	36, 218, 241
CviJI	RGCY	5 cut(s)	98, 137, 199, 213, 371
CviKI_1	RGCY	5 cut(s)	98, 137, 199, 213, 371
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	106, 264
DpnII	GATC	2 cut(s)	104, 262
Eco47III	AGCGCT	1 cut(s)	144
Eco88I	CYCGRG	2 cut(s)	200, 270
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	39, 221, 244
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	35, 217, 240
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	146
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	39, 221, 244
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	88, 281
HpyCH4IV	ACGT	2 cut(s)	159, 360
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	159, 360
Hsp92II	CATG	3 cut(s)	39, 221, 244
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	104, 262
LmnI	GCTCC	3 cut(s)	131, 140, 292
LpnPI	CCDG	6 cut(s)	71, 123, 134, 151, 178, 227
Lsp1109I	GCAGC	1 cut(s)	146
MaeII	ACGT	2 cut(s)	159, 360
MaeIII	GTNAC	2 cut(s)	39, 160
MalI	GATC	2 cut(s)	106, 264
MboI	GATC	2 cut(s)	104, 262
MboII	GAAGA	1 cut(s)	389
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	6 cut(s)	42, 122, 162, 196, 277, 361
MslI	CAYNNNNRTG	2 cut(s)	34, 239
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	104, 262
NlaIII	CATG	3 cut(s)	39, 221, 244
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspXI	VCTCGAGB	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	34, 239
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	104, 262
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	4 cut(s)	139, 162, 363, 396
SfcI	CTRYAG	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	2 cut(s)	34, 239
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	164
TaiI	ACGT	2 cut(s)	162, 363
TaqI	TCGA	4 cut(s)	20, 156, 201, 335
TasI	AATT	1 cut(s)	296
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.