Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

81087230 .. 81088976

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCCTGCAATTCACGGACAAGCGCTTCCAGCCTGTGCATGATCTCACCATTGGCGTCGAGTTCGGAGCTCGCATGGTCACAATTGAAACCCGGCCCATCAAGCTACAGATTTGGGACACCGCTGGGCAAGAGTCTTTCAGGTCCATTACTAGATCTTACTACAGGGAGCGGCTGGGGCACTGCTGGAGGGAGACATTTAATCATCTGGCAAGCTGGCTAGAGGATGCCCGGCAGCATGCAAATCCTAACATGACAATCATGCTCGTTGGGAACAAGTGTGATCTTGCTCATCGAAGGGCTGTCAGTAAAGAGGAAGGGGAGCAATTTGCAAAGGAGAATGGTCTTTTATTCTTGGAGGCGTCTGCGAGAACTGCTCAAAATGTTGAGGAGGCCTTCATAAAGACTGCTGGAAAGATTCTTCAGAATATCCAGGATGGTGTGTTTGATGTATCAAATGAGTCATCTGGTATCAAGGTTGGATATGGACGCCCCCAAGGTTCAGCAGGCGCAAGAGATGGAGCTGTTGCTCAGAGAAGTGGATGTTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

7.66

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 128	1.5e-07	ADP-ribosylation factor family
Ras	PF00071	8 - 162	2.1e-51	Ras family
Roc	PF08477	8 - 116	7.5e-27	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	235
AciI	CCGC	2 cut(s)	186, 235
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	3 cut(s)	120, 425, 553
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	22, 152
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	5 cut(s)	134, 169, 279, 587, 615
AluI	AGCT	5 cut(s)	134, 169, 279, 587, 615
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	251
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	158, 456
ApeKI	GCWGC	1 cut(s)	298
AspLEI	GCGC	2 cut(s)	90, 575
AspS9I	GGNCC	2 cut(s)	159, 207
AsuC2I	CCSGG	2 cut(s)	157, 295
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	3 cut(s)	170, 494, 575
BciT130I	CCWGG	1 cut(s)	497
BcnI	CCSGG	2 cut(s)	157, 295
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	216, 284
BfmI	CTRYAG	2 cut(s)	170, 226
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	236, 299
BlsI	GCNGC	2 cut(s)	237, 300
Bme1390I	CCNGG	3 cut(s)	157, 295, 497
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	159, 207
BmrFI	CCNGG	3 cut(s)	157, 295, 497
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpmI	CTGGAG	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	157, 295
BsaHI	GRCGYC	3 cut(s)	120, 425, 553
BsaJI	CCNNGG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	3 cut(s)	295, 505, 611
BseMII	CTCAG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	2 cut(s)	188, 238
BshFI	GGCC	2 cut(s)	160, 458
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	157, 295
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	160, 458
Bsp1286I	GDGCHC	2 cut(s)	136, 246
Bsp143I	GATC	3 cut(s)	106, 218, 346
BspACI	CCGC	2 cut(s)	186, 235
BspANI	GGCC	2 cut(s)	160, 458
BspCNI	CTCAG	1 cut(s)	607
BsrBI	CCGCTC	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	3 cut(s)	106, 218, 346
BssNI	GRCGYC	3 cut(s)	120, 425, 553
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	3 cut(s)	120, 425, 553
BstC8I	GCNNGC	6 cut(s)	65, 136, 277, 281, 303, 571
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	295, 505, 611
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 575
BstKTI	GATC	3 cut(s)	109, 221, 349
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	106, 218, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 166, 241, 437
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	155, 293, 495
BstSFI	CTRYAG	2 cut(s)	170, 226
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	160, 458
BtsCI	GGATG	3 cut(s)	295, 505, 611
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	6 cut(s)	65, 136, 277, 281, 303, 571
CfoI	GCGC	2 cut(s)	90, 575
Cfr13I	GGNCC	2 cut(s)	159, 207
CseI	GACGC	3 cut(s)	109, 414, 561
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	104, 139, 302, 316, 325
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	3 cut(s)	108, 220, 348
DpnII	GATC	3 cut(s)	106, 218, 346
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	5 cut(s)	107, 142, 305, 319, 328
FaiI	YATR	7 cut(s)	105, 140, 303, 317, 326, 464, 549
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	103, 138, 301, 315, 324
Fnu4HI	GCNGC	2 cut(s)	236, 299
FokI	GGATG	2 cut(s)	302, 512
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	236, 299
FspBI	CTAG	2 cut(s)	216, 284
GlaI	GCGC	2 cut(s)	89, 574
GluI	GCNGC	2 cut(s)	236, 299
GsaI	CCCAGC	2 cut(s)	192, 242
GsuI	CTGGAG	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	160, 458
HapII	CCGG	2 cut(s)	157, 295
HgaI	GACGC	3 cut(s)	109, 414, 561
HhaI	GCGC	2 cut(s)	90, 575
Hin1I	GRCGYC	3 cut(s)	120, 425, 553
Hin1II	CATG	5 cut(s)	107, 142, 305, 319, 328
Hin6I	GCGC	2 cut(s)	88, 573
HinP1I	GCGC	2 cut(s)	88, 573
HinfI	GANTC	3 cut(s)	197, 481, 524
HpaII	CCGG	2 cut(s)	157, 295
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	131, 489, 597
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	354, 374, 469
HpyCH4V	TGCA	4 cut(s)	73, 103, 305, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 166, 241, 437
HpyF3I	CTNAG	1 cut(s)	594
Hsp92I	GRCGYC	3 cut(s)	120, 425, 553
Hsp92II	CATG	5 cut(s)	107, 142, 305, 319, 328
HspAI	GCGC	2 cut(s)	88, 573
Kzo9I	GATC	3 cut(s)	106, 218, 346
LmnI	GCTCC	5 cut(s)	72, 131, 232, 385, 584
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	216, 284
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 220, 348
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	106, 218, 346
MboII	GAAGA	2 cut(s)	10, 476
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	136, 246
MluCI	AATT	3 cut(s)	74, 147, 389
MlyI	GAGTC	2 cut(s)	206, 533
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	7 cut(s)	26, 246, 280, 370, 415, 445, 448
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	157, 295
MspR9I	CCNGG	3 cut(s)	157, 295, 497
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	4 cut(s)	94, 166, 241, 437
NciI	CCSGG	2 cut(s)	157, 295
NdeII	GATC	3 cut(s)	106, 218, 346
NlaIII	CATG	5 cut(s)	107, 142, 305, 319, 328
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	481
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	237, 300
PleI	GAGTC	2 cut(s)	205, 532
PpsI	GAGTC	2 cut(s)	205, 532
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	2 cut(s)	188, 238
PspGI	CCWGG	1 cut(s)	495
PspPI	GGNCC	2 cut(s)	159, 207
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	236, 299
Sau3AI	GATC	3 cut(s)	106, 218, 346
Sau96I	GGNCC	2 cut(s)	159, 207
SchI	GAGTC	2 cut(s)	206, 533
ScrFI	CCNGG	3 cut(s)	157, 295, 497
SduI	GDGCHC	2 cut(s)	136, 246
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	170, 226
SinI	GGWCC	1 cut(s)	207
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	74, 147, 389
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	2 cut(s)	186, 235
SspMI	CTAG	2 cut(s)	216, 284
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	155, 293, 495
StyI	CCWWGG	1 cut(s)	559
TaqI	TCGA	2 cut(s)	123, 358
TasI	AATT	3 cut(s)	74, 147, 389
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	451
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	305
XspI	CTAG	2 cut(s)	216, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.