Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

1585423 .. 1588012

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTTGGAAAATCTTGCTTGCTGCTGCAATTCACGGATAAGAGGTTCCAGCCGGTGCATGATCTCACCATTGGTGTCGAGTTCGGAGCTCGGATGGTCACCATCGACGGTCGTCCTATCAAGCTCCAGATTTGGGACACCGCTGGGCAAGAATCTTTCCGATCAATCACTAGGTCTTACTACAGAGGAGCAGCTGGAGCACTTCTGGTCTATGACATAACCAGGAGAGAGACATTTAATCATCTTGCAAGCTGGTTAGAGGATGCCCGGCAGCATGCAAATCCTAATATGACAATCATGCTCATAGGGAACAAGTGTGATCTGTCTCACAGAAGGGCTGTCAGCAAAGAGGAAGGAGAGCAATTTGCAAAGGAGAATGGGCTTTTGTTCTTGGAGGCATCTGCAAGAACGGCACAAAATGTCGAGGAGGCCTTCATAAAGACTGCTGCAAAGATTCTTCAGAATATTCAGGAAGGCGTATTTGACGTATCTAATGAGTCATCTGGCATCAAGGTTGGATACGGACGCCCCCAAGGTCCATCAGGCACGGGTGGAACGGTTGCTCAGAGAGGCGGATGTTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.19

Weight (kDa)

7.68

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 158	9.1e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	1.6e-63	Ras family
Roc	PF08477	8 - 122	1.1e-32	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 618
AcuI	CTGAAG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	571
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	266
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	134, 169, 239, 297, 630
AluI	AGCT	5 cut(s)	134, 169, 239, 297, 630
Alw21I	GWGCWC	2 cut(s)	136, 247
Alw26I	GTCTC	2 cut(s)	269, 375
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	6 cut(s)	67, 70, 236, 316, 491, 627
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	103, 136
AvaII	GGWCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	136, 247
BbvI	GCAGC	5 cut(s)	54, 57, 248, 328, 478
BccI	CCATC	3 cut(s)	133, 155, 592
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	269, 375
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	6 cut(s)	68, 71, 237, 317, 492, 628
BlsI	GCNGC	6 cut(s)	69, 72, 238, 318, 493, 629
Bme1390I	CCNGG	2 cut(s)	268, 313
Bme18I	GGWCC	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	268, 313
BmsI	GCATC	3 cut(s)	298, 452, 561
BoxI	GACNNNNGTC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	155, 261
BpuMI	CCSGG	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	144, 313, 626
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	623
BseRI	GAGGAG	2 cut(s)	246, 485
BseXI	GCAGC	5 cut(s)	54, 57, 248, 328, 478
BseYI	CCCAGC	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	136, 247
BsiSI	CCGG	2 cut(s)	98, 313
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	269, 375
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	136, 247
Bsp143I	GATC	3 cut(s)	106, 206, 364
BspACI	CCGC	2 cut(s)	186, 618
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	106, 206, 364
BssNI	GRCGYC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	155, 604
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	571
BstC8I	GCNNGC	3 cut(s)	65, 295, 321
BstDEI	CTNAG	1 cut(s)	609
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	144, 313, 626
BstKTI	GATC	3 cut(s)	109, 209, 367
BstMAI	GTCTC	2 cut(s)	269, 375
BstMBI	GATC	3 cut(s)	106, 206, 364
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	156
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	266, 311
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	5 cut(s)	54, 57, 248, 328, 478
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	144, 313, 626
Cac8I	GCNNGC	3 cut(s)	65, 295, 321
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	104, 320, 343
CviJI	RGCY	9 cut(s)	97, 134, 169, 239, 297, 383, 427, 476, 630
CviKI_1	RGCY	9 cut(s)	97, 134, 169, 239, 297, 383, 427, 476, 630
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	108, 208, 366
DpnII	GATC	3 cut(s)	106, 206, 364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
EciI	GGCGGA	1 cut(s)	633
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	488
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	3 cut(s)	107, 323, 346
FaiI	YATR	8 cut(s)	105, 258, 263, 321, 335, 344, 350, 482
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	103, 319, 342
Fnu4HI	GCNGC	6 cut(s)	68, 71, 237, 317, 492, 628
FokI	GGATG	2 cut(s)	151, 320
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	6 cut(s)	68, 71, 237, 317, 492, 628
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	6 cut(s)	68, 71, 237, 317, 492, 628
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	155, 261
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	2 cut(s)	98, 313
HgaI	GACGC	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	3 cut(s)	107, 323, 346
HinfI	GANTC	3 cut(s)	197, 499, 542
HpaII	CCGG	2 cut(s)	98, 313
HphI	GGTGA	2 cut(s)	103, 136
Hpy188I	TCNGA	5 cut(s)	131, 138, 206, 507, 612
Hpy188III	TCNNGA	2 cut(s)	172, 515
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	4 cut(s)	372, 392, 487, 512
HpyCH4III	ACNGT	2 cut(s)	155, 604
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	8 cut(s)	73, 103, 293, 323, 413, 449, 494, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	107, 323, 346
Kzo9I	GATC	3 cut(s)	106, 206, 364
LmnI	GCTCC	4 cut(s)	131, 174, 233, 242
Lsp1109I	GCAGC	5 cut(s)	54, 57, 248, 328, 478
LweI	GCATC	3 cut(s)	298, 452, 561
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 208, 366
MboI	GATC	3 cut(s)	106, 206, 364
MboII	GAAGA	2 cut(s)	10, 494
MhlI	GDGCHC	2 cut(s)	136, 247
MluCI	AATT	2 cut(s)	74, 407
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	31, 541
MnlI	CCTC	9 cut(s)	26, 81, 224, 298, 388, 433, 463, 466, 608
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	188, 239, 630
MspI	CCGG	2 cut(s)	98, 313
MspR9I	CCNGG	2 cut(s)	268, 313
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	106, 206, 364
NlaIII	CATG	3 cut(s)	107, 323, 346
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	197, 499
PkrI	GCNGC	6 cut(s)	69, 72, 238, 318, 493, 629
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	581
PvuII	CAGCTG	2 cut(s)	239, 630
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	6 cut(s)	68, 71, 237, 317, 492, 628
Sau3AI	GATC	3 cut(s)	106, 206, 364
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	268, 313
SduI	GDGCHC	2 cut(s)	136, 247
SfaNI	GCATC	3 cut(s)	298, 452, 561
SfcI	CTRYAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	581
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	74, 407
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	186, 618
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	266, 311
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	155, 604
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	123, 150, 468
TasI	AATT	2 cut(s)	74, 407
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	197, 499
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	6 cut(s)	67, 70, 236, 316, 491, 627
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	2 cut(s)	95, 582
VpaK11BI	GGWCC	1 cut(s)	581
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.