Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

86461814 .. 86464014

Gene Structure 2201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGGCGGGCAAAGCCAAAAGACCAACCAAAGCAAGCGCAGAAGAGCAGCGACACACACCATTCTTCTTGCTCCTCCTTCTTCGATACGACGTCGTCTCGTCTCAGGCCAGCCATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCCTGCAATTCACGGACAAGCGCTTCCAGCCTGTGCATGATCTCACCATTGGCGTCGAGTTCGGAGCTCGCATGGTCACAATTGAAACCCGGCCCATCAAGCTACAGATTTGGGACACCGCTGGGCAAGAGTCTTTCAGGTCCATTACTAGATCTTACTACAGAGGAGCGGCTGGGGCACTGCTGGTTTATGACATAACCAGGAGGGAGACATTTAATCATCTGGCAAGCTGGCTAGAGGATGCCCGGCAGCATGCAAATCCCAACATGACAATCATGCTCGTTGGGAACAAGTGTGATCTTGCTCATAGAAGGGCTGTCAGTAAAGAGGAAGGGGAGCAATTTGCAAAGGAGAATGGTCTTTTATTCTTGGAGGCGTCTGCGAGAACTGCTCAAAATGTTGAGGAGGCCTTCATAAAGACTGCTGGAAAGATTCTTCAGAATATCCAGGATGGTGTGTTTGATGTATCAAATGAGTCATCTGGTATCAAGGTTGGATATGGACGCCCCCAAGGTTCAGCAGGCGCAAGAGATGGAGCTGTTGCTCAGAGAAGTGGATGTTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

249

Amino Acids

27.64

Weight (kDa)

9.08

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	43 - 189	2.9e-12	ADP-ribosylation factor family
Ras	PF00071	46 - 206	1.6e-62	Ras family
Roc	PF08477	46 - 160	7.1e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	350
AciI	CCGC	3 cut(s)	7, 300, 350
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	4 cut(s)	92, 234, 557, 685
AfaI	GTAC	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	136, 266
AjnI	CCWGG	2 cut(s)	380, 627
AluBI	AGCT	5 cut(s)	248, 283, 411, 719, 747
AluI	AGCT	5 cut(s)	248, 283, 411, 719, 747
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	3 cut(s)	102, 107, 383
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	3 cut(s)	107, 272, 588
ApeKI	GCWGC	3 cut(s)	48, 430, 744
AspLEI	GCGC	3 cut(s)	40, 204, 707
AspS9I	GGNCC	2 cut(s)	273, 321
AsuC2I	CCSGG	2 cut(s)	271, 427
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	60, 442
BccI	CCATC	3 cut(s)	284, 626, 707
BciT130I	CCWGG	2 cut(s)	382, 629
BcnI	CCSGG	2 cut(s)	271, 427
BcoDI	GTCTC	3 cut(s)	102, 107, 383
BfaI	CTAG	2 cut(s)	330, 416
BfmI	CTRYAG	2 cut(s)	284, 340
BfoI	RGCGCY	1 cut(s)	205
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	4 cut(s)	49, 351, 431, 745
BlsI	GCNGC	4 cut(s)	50, 352, 432, 746
Bme1390I	CCNGG	4 cut(s)	271, 382, 427, 629
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	273, 321
BmrFI	CCNGG	4 cut(s)	271, 382, 427, 629
BmsI	GCATC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
BpuMI	CCSGG	2 cut(s)	271, 427
BsaHI	GRCGYC	4 cut(s)	92, 234, 557, 685
BsaJI	CCNNGG	1 cut(s)	691
BseBI	CCWGG	2 cut(s)	382, 629
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	3 cut(s)	427, 637, 743
BseMII	CTCAG	2 cut(s)	118, 740
BseRI	GAGGAG	3 cut(s)	64, 360, 599
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	60, 442
BseYI	CCCAGC	2 cut(s)	302, 353
BshFI	GGCC	3 cut(s)	109, 274, 590
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	271, 427
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	3 cut(s)	102, 107, 383
BsmBI	CGTCTC	2 cut(s)	102, 107
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	109, 274, 590
Bsp1286I	GDGCHC	2 cut(s)	250, 361
Bsp143I	GATC	3 cut(s)	220, 332, 478
BspACI	CCGC	3 cut(s)	7, 300, 350
BspANI	GGCC	3 cut(s)	109, 274, 590
BspCNI	CTCAG	2 cut(s)	117, 739
BspQI	GCTCTTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	3 cut(s)	220, 332, 478
BssNI	GRCGYC	4 cut(s)	92, 234, 557, 685
BssT1I	CCWWGG	1 cut(s)	691
Bst2UI	CCWGG	2 cut(s)	382, 629
Bst6I	CTCTTC	2 cut(s)	38, 137
BstACI	GRCGYC	4 cut(s)	92, 234, 557, 685
BstC8I	GCNNGC	9 cut(s)	9, 36, 111, 179, 250, 409, 413, 435, 703
BstDEI	CTNAG	2 cut(s)	104, 726
BstF5I	GGATG	3 cut(s)	427, 637, 743
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	3 cut(s)	40, 204, 707
BstKTI	GATC	3 cut(s)	223, 335, 481
BstMAI	GTCTC	3 cut(s)	102, 107, 383
BstMBI	GATC	3 cut(s)	220, 332, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 208, 280, 356, 569
BstNI	CCWGG	2 cut(s)	382, 629
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	4 cut(s)	269, 380, 425, 627
BstSFI	CTRYAG	2 cut(s)	284, 340
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	60, 442
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	109, 274, 590
BtsCI	GGATG	3 cut(s)	427, 637, 743
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	9 cut(s)	9, 36, 111, 179, 250, 409, 413, 435, 703
CfoI	GCGC	3 cut(s)	40, 204, 707
Cfr13I	GGNCC	2 cut(s)	273, 321
CseI	GACGC	3 cut(s)	223, 546, 693
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	6 cut(s)	115, 218, 253, 434, 448, 457
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	2 cut(s)	104, 726
DpnI	GATC	3 cut(s)	222, 334, 480
DpnII	GATC	3 cut(s)	220, 332, 478
Eam1104I	CTCTTC	2 cut(s)	38, 137
EarI	CTCTTC	2 cut(s)	38, 137
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	691
Eco147I	AGGCCT	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	380, 627
EcoT14I	CCWWGG	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	691
Esp3I	CGTCTC	2 cut(s)	102, 107
FaeI	CATG	6 cut(s)	118, 221, 256, 437, 451, 460
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	6 cut(s)	114, 217, 252, 433, 447, 456
Fnu4HI	GCNGC	4 cut(s)	49, 351, 431, 745
FokI	GGATG	2 cut(s)	434, 644
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	4 cut(s)	49, 351, 431, 745
FspBI	CTAG	2 cut(s)	330, 416
GlaI	GCGC	3 cut(s)	39, 203, 706
GluI	GCNGC	4 cut(s)	49, 351, 431, 745
GsaI	CCCAGC	2 cut(s)	306, 357
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	109, 274, 590
HapII	CCGG	2 cut(s)	271, 427
HgaI	GACGC	3 cut(s)	223, 546, 693
HhaI	GCGC	3 cut(s)	40, 204, 707
Hin1I	GRCGYC	4 cut(s)	92, 234, 557, 685
Hin1II	CATG	6 cut(s)	118, 221, 256, 437, 451, 460
Hin6I	GCGC	3 cut(s)	38, 202, 705
HinP1I	GCGC	3 cut(s)	38, 202, 705
HinfI	GANTC	3 cut(s)	311, 613, 656
HpaII	CCGG	2 cut(s)	271, 427
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	245, 621, 729
Hpy99I	CGWCG	3 cut(s)	94, 97, 239
HpyAV	CCTTC	4 cut(s)	88, 486, 506, 601
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	187, 217, 437, 527, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 208, 280, 356, 569
HpyF3I	CTNAG	2 cut(s)	104, 726
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	4 cut(s)	92, 234, 557, 685
Hsp92II	CATG	6 cut(s)	118, 221, 256, 437, 451, 460
HspAI	GCGC	3 cut(s)	38, 202, 705
Kzo9I	GATC	3 cut(s)	220, 332, 478
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	6 cut(s)	77, 186, 245, 347, 517, 716
Lsp1109I	GCAGC	2 cut(s)	60, 442
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	330, 416
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	222, 334, 480
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	3 cut(s)	220, 332, 478
MboII	GAAGA	5 cut(s)	55, 57, 73, 124, 608
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	250, 361
MluCI	AATT	3 cut(s)	188, 261, 521
MlyI	GAGTC	2 cut(s)	320, 665
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	9 cut(s)	85, 140, 338, 378, 412, 502, 547, 577, 580
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	2 cut(s)	302, 747
MspI	CCGG	2 cut(s)	271, 427
MspR9I	CCNGG	4 cut(s)	271, 382, 427, 629
MunI	CAATTG	1 cut(s)	261
MvaI	CCWGG	2 cut(s)	382, 629
MwoI	GCNNNNNNNGC	5 cut(s)	13, 208, 280, 356, 569
NciI	CCSGG	2 cut(s)	271, 427
NdeII	GATC	3 cut(s)	220, 332, 478
NlaIII	CATG	6 cut(s)	118, 221, 256, 437, 451, 460
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	4 cut(s)	50, 352, 432, 746
PleI	GAGTC	2 cut(s)	319, 664
PpsI	GAGTC	2 cut(s)	319, 664
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	380, 627
PspFI	CCCAGC	2 cut(s)	302, 353
PspGI	CCWGG	2 cut(s)	380, 627
PspPI	GGNCC	2 cut(s)	273, 321
PsuI	RGATCY	1 cut(s)	332
PsyI	GACNNNGTC	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	747
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	49, 351, 431, 745
Sau3AI	GATC	3 cut(s)	220, 332, 478
Sau96I	GGNCC	2 cut(s)	273, 321
SchI	GAGTC	2 cut(s)	320, 665
ScrFI	CCNGG	4 cut(s)	271, 382, 427, 629
SduI	GDGCHC	2 cut(s)	250, 361
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	2 cut(s)	284, 340
SinI	GGWCC	1 cut(s)	321
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	3 cut(s)	188, 261, 521
SseBI	AGGCCT	1 cut(s)	590
SsiI	CCGC	3 cut(s)	7, 300, 350
SspMI	CTAG	2 cut(s)	330, 416
SstI	GAGCTC	1 cut(s)	250
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	4 cut(s)	269, 380, 425, 627
StyI	CCWWGG	1 cut(s)	691
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	84, 237
TasI	AATT	3 cut(s)	188, 261, 521
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	48, 430, 744
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	366
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	2 cut(s)	330, 416
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.