Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

79934582 .. 79936942

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG625100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCCTGCAATTCACGGACAAGCGCTTCCAGCCTGTGCATGATCTCACCATTGGCGTCGAGTTCGGAGCTCGCATGGTCACAATTGAAACCCGGCCCATCAAGCTACAGATTTGGGACACCGCTGGGCAAGAGTCTTTCAGGTCCATTACTAGATCTTACTACAGAGGAGCGGCTGGGGCACTGCTGGTTTATGACATAACCAGGAGGGAGACATTTAATCATCTGGCAAGCTGGCTAGAGGATGCCCGGCAGCATGCAAATCCTAACATGACAATCATGCTCGTTGGGAACAAGTGTGATCTTGCTCATAGAAGGGCTGTCAGTAAAGAGGAAGGGGAGCAATTTGCAAAGGAGAATGGTCTTTTATTCTTGGAGGCGTCTGCGAGAACTGCTCAAAATGTTGAGGAGGCCTTCATAAAGACTGCTGGAAAGATTCTTCAGAATATCCAGGATGGTGTGTTTGATGTATCAAATGAGGTAATTTTCAAGTCATTTGTTGAGGAGATTGATGGCTATAGGAGTTGGGTCAGTTTTAAATTTTGCTTGTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

206

Amino Acids

23.49

Weight (kDa)

6.11

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 154	2.6e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	8.8e-63	Ras family
Roc	PF08477	8 - 122	4.3e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AciI	CCGC	2 cut(s)	186, 236
AcsI	RAATTY	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	488
AcyI	GRCGYC	2 cut(s)	120, 443
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	22, 152, 553
AjnI	CCWGG	2 cut(s)	266, 513
AluBI	AGCT	3 cut(s)	134, 169, 297
AluI	AGCT	3 cut(s)	134, 169, 297
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	158, 474
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	159, 207
AsuC2I	CCSGG	2 cut(s)	157, 313
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	3 cut(s)	170, 512, 569
BciT130I	CCWGG	2 cut(s)	268, 515
BcnI	CCSGG	2 cut(s)	157, 313
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	216, 302
BfmI	CTRYAG	3 cut(s)	170, 226, 580
BfoI	RGCGCY	1 cut(s)	91
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	237, 317
BlsI	GCNGC	2 cut(s)	238, 318
Bme1390I	CCNGG	4 cut(s)	157, 268, 313, 515
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	159, 207
BmrFI	CCNGG	4 cut(s)	157, 268, 313, 515
BmsI	GCATC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BpuMI	CCSGG	2 cut(s)	157, 313
BsaHI	GRCGYC	2 cut(s)	120, 443
BseBI	CCWGG	2 cut(s)	268, 515
BseGI	GGATG	2 cut(s)	313, 523
BseRI	GAGGAG	3 cut(s)	246, 485, 581
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	328
BseYI	CCCAGC	2 cut(s)	188, 239
BshFI	GGCC	2 cut(s)	160, 476
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	157, 313
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	160, 476
Bsp1286I	GDGCHC	2 cut(s)	136, 247
Bsp143I	GATC	3 cut(s)	106, 218, 364
BspACI	CCGC	2 cut(s)	186, 236
BspANI	GGCC	2 cut(s)	160, 476
BsrBI	CCGCTC	1 cut(s)	236
BssMI	GATC	3 cut(s)	106, 218, 364
BssNI	GRCGYC	2 cut(s)	120, 443
Bst2UI	CCWGG	2 cut(s)	268, 515
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	2 cut(s)	120, 443
BstC8I	GCNNGC	5 cut(s)	65, 136, 295, 299, 321
BstF5I	GGATG	2 cut(s)	313, 523
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	109, 221, 367
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	106, 218, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
BstNI	CCWGG	2 cut(s)	268, 515
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	4 cut(s)	155, 266, 311, 513
BstSFI	CTRYAG	3 cut(s)	170, 226, 580
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	160, 476
BtsCI	GGATG	2 cut(s)	313, 523
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	5 cut(s)	65, 136, 295, 299, 321
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	159, 207
CseI	GACGC	2 cut(s)	109, 432
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	104, 139, 320, 334, 343
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	3 cut(s)	108, 220, 366
DpnII	GATC	3 cut(s)	106, 218, 364
DraI	TTTAAA	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	266, 513
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	5 cut(s)	107, 142, 323, 337, 346
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	103, 138, 319, 333, 342
Fnu4HI	GCNGC	2 cut(s)	237, 317
FokI	GGATG	2 cut(s)	320, 530
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	237, 317
FspBI	CTAG	2 cut(s)	216, 302
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	237, 317
GsaI	CCCAGC	2 cut(s)	192, 243
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	160, 476
HapII	CCGG	2 cut(s)	157, 313
HgaI	GACGC	2 cut(s)	109, 432
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	2 cut(s)	120, 443
Hin1II	CATG	5 cut(s)	107, 142, 323, 337, 346
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	197, 499
HpaII	CCGG	2 cut(s)	157, 313
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	131, 507
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	372, 392, 487
HpyCH4V	TGCA	4 cut(s)	73, 103, 323, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
Hsp92I	GRCGYC	2 cut(s)	120, 443
Hsp92II	CATG	5 cut(s)	107, 142, 323, 337, 346
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	106, 218, 364
LmnI	GCTCC	4 cut(s)	72, 131, 233, 403
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	216, 302
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 220, 366
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	3 cut(s)	106, 218, 364
MboII	GAAGA	2 cut(s)	10, 494
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	136, 247
MluCI	AATT	5 cut(s)	74, 147, 407, 546, 602
MlyI	GAGTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	282, 600
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	157, 313
MspR9I	CCNGG	4 cut(s)	157, 268, 313, 515
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	268, 515
MwoI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
NciI	CCSGG	2 cut(s)	157, 313
NdeII	GATC	3 cut(s)	106, 218, 364
NlaIII	CATG	5 cut(s)	107, 142, 323, 337, 346
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	2 cut(s)	238, 318
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	266, 513
PspFI	CCCAGC	2 cut(s)	188, 239
PspGI	CCWGG	2 cut(s)	266, 513
PspPI	GGNCC	2 cut(s)	159, 207
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	282, 600
SatI	GCNGC	2 cut(s)	237, 317
Sau3AI	GATC	3 cut(s)	106, 218, 364
Sau96I	GGNCC	2 cut(s)	159, 207
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	4 cut(s)	157, 268, 313, 515
SduI	GDGCHC	2 cut(s)	136, 247
SetI	ASST	7 cut(s)	18, 49, 136, 171, 209, 299, 546
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	3 cut(s)	170, 226, 580
SinI	GGWCC	1 cut(s)	207
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	5 cut(s)	74, 147, 407, 546, 602
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	186, 236
SspMI	CTAG	2 cut(s)	216, 302
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	4 cut(s)	155, 266, 311, 513
TaqI	TCGA	1 cut(s)	123
TasI	AATT	5 cut(s)	74, 147, 407, 546, 602
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	282, 600
Tru9I	TTAA	2 cut(s)	282, 600
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	216, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.