Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

81637800 .. 81639538

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCATGCCTGCTTCTGCAATTCACGGACAAGCGGTTCCAGCCTGTGCATGATCTCACCATTGGCGTCGAGTTCGGAGCTCGTATGGTCACAATTGAAACCCGGCCCATCAAGCTACAGATTTGGGACACCGCTGGGCAAGAGTCTTTCAGGTCCATTACTAGATCCTACTACAGAGGCGCAGCTGGGGCACTGCTGGTTTATGACATAACCAGGAGGGAGACATTTAATCATCTGGCAAGCTGGCTAGAGGATGCCCGGCAGCATGCAAATCCTAACATGACAATCATGCTCGTTGGGAACAAGTGTGATCTTGCTCATAGAAGGGCTGTCAGCAAAGAGGAAGGGGAGCAATTTGCAAAGGAGAATGGTCTTTTATTCTTGGAGGCGTCTGCAAGAACTGCTCAAAATGTTGAGGAGGCCTTCATAAAGACTGCTGGAAAGATTCTTCAGAATATCCAGGATGGTGTGTTTGATGTATCAAATGAGTCATCTGGTATCAAGGTTGGATATGGACGCCCCCAAGGTTCATCAGGTGCAAGAGATGGAGCTGTTGCTCAGAGAAGTGGATGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.37

Weight (kDa)

7.68

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 154	2.9e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	9.5e-63	Ras family
Roc	PF08477	8 - 122	4.6e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 186
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	488
AcyI	GRCGYC	3 cut(s)	120, 443, 571
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	22, 152
AjnI	CCWGG	2 cut(s)	266, 513
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	134, 169, 239, 297, 605, 633
AluI	AGCT	6 cut(s)	134, 169, 239, 297, 605, 633
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	158, 474
ApeKI	GCWGC	3 cut(s)	236, 316, 630
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	159, 207
AsuC2I	CCSGG	2 cut(s)	157, 313
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	248, 328
BccI	CCATC	3 cut(s)	170, 512, 593
BciT130I	CCWGG	2 cut(s)	268, 515
BcnI	CCSGG	2 cut(s)	157, 313
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	216, 302
BfmI	CTRYAG	2 cut(s)	170, 226
BisI	GCNGC	3 cut(s)	237, 317, 631
BlsI	GCNGC	3 cut(s)	238, 318, 632
Bme1390I	CCNGG	4 cut(s)	157, 268, 313, 515
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	159, 207
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	4 cut(s)	157, 268, 313, 515
BmsI	GCATC	1 cut(s)	298
BpuMI	CCSGG	2 cut(s)	157, 313
BsaHI	GRCGYC	3 cut(s)	120, 443, 571
BsaJI	CCNNGG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	268, 515
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	313, 523, 629
BseMII	CTCAG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	248, 328
BseYI	CCCAGC	2 cut(s)	188, 239
BshFI	GGCC	2 cut(s)	160, 476
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	157, 313
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	160, 476
Bsp1286I	GDGCHC	2 cut(s)	136, 247
Bsp143I	GATC	3 cut(s)	106, 218, 364
BspACI	CCGC	2 cut(s)	88, 186
BspANI	GGCC	2 cut(s)	160, 476
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	3 cut(s)	106, 218, 364
BssNI	GRCGYC	3 cut(s)	120, 443, 571
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	268, 515
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	3 cut(s)	120, 443, 571
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	65, 295, 299, 321
BstDEI	CTNAG	1 cut(s)	612
BstF5I	GGATG	3 cut(s)	313, 523, 629
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	109, 221, 367
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	106, 218, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
BstNI	CCWGG	2 cut(s)	268, 515
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	4 cut(s)	155, 266, 311, 513
BstSFI	CTRYAG	2 cut(s)	170, 226
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	248, 328
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	160, 476
BtsCI	GGATG	3 cut(s)	313, 523, 629
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	4 cut(s)	65, 295, 299, 321
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	159, 207
CseI	GACGC	3 cut(s)	109, 432, 579
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	60, 104, 320, 334, 343
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	612
DpnI	GATC	3 cut(s)	108, 220, 366
DpnII	GATC	3 cut(s)	106, 218, 364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	266, 513
EcoT14I	CCWWGG	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	5 cut(s)	63, 107, 323, 337, 346
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	59, 103, 319, 333, 342
Fnu4HI	GCNGC	3 cut(s)	237, 317, 631
FokI	GGATG	2 cut(s)	320, 530
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	237, 317, 631
FspBI	CTAG	2 cut(s)	216, 302
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	3 cut(s)	237, 317, 631
GsaI	CCCAGC	2 cut(s)	192, 243
HaeIII	GGCC	2 cut(s)	160, 476
HapII	CCGG	2 cut(s)	157, 313
HgaI	GACGC	3 cut(s)	109, 432, 579
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	3 cut(s)	120, 443, 571
Hin1II	CATG	5 cut(s)	63, 107, 323, 337, 346
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	197, 499, 542
HpaII	CCGG	2 cut(s)	157, 313
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	131, 507, 615
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	372, 392, 487
HpyCH4V	TGCA	7 cut(s)	73, 103, 323, 413, 449, 593, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
HpyF3I	CTNAG	1 cut(s)	612
Hsp92I	GRCGYC	3 cut(s)	120, 443, 571
Hsp92II	CATG	5 cut(s)	63, 107, 323, 337, 346
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	106, 218, 364
LmnI	GCTCC	3 cut(s)	131, 403, 602
Lsp1109I	GCAGC	2 cut(s)	248, 328
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	216, 302
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 220, 366
MboI	GATC	3 cut(s)	106, 218, 364
MboII	GAAGA	2 cut(s)	10, 494
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	136, 247
MluCI	AATT	3 cut(s)	74, 147, 407
MlyI	GAGTC	2 cut(s)	206, 551
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	26, 224, 264, 298, 388, 433, 463, 466
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	188, 239
MspI	CCGG	2 cut(s)	157, 313
MspR9I	CCNGG	4 cut(s)	157, 268, 313, 515
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	268, 515
MwoI	GCNNNNNNNGC	4 cut(s)	94, 166, 242, 455
NciI	CCSGG	2 cut(s)	157, 313
NdeII	GATC	3 cut(s)	106, 218, 364
NlaIII	CATG	5 cut(s)	63, 107, 323, 337, 346
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	3 cut(s)	238, 318, 632
PleI	GAGTC	2 cut(s)	205, 550
PpsI	GAGTC	2 cut(s)	205, 550
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	266, 513
PspFI	CCCAGC	2 cut(s)	188, 239
PspGI	CCWGG	2 cut(s)	266, 513
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	159, 207
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	237, 317, 631
Sau3AI	GATC	3 cut(s)	106, 218, 364
Sau96I	GGNCC	2 cut(s)	159, 207
SchI	GAGTC	2 cut(s)	206, 551
ScrFI	CCNGG	4 cut(s)	157, 268, 313, 515
SduI	GDGCHC	2 cut(s)	136, 247
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	2 cut(s)	170, 226
SinI	GGWCC	1 cut(s)	207
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	74, 147, 407
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	88, 186
SspMI	CTAG	2 cut(s)	216, 302
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	4 cut(s)	155, 266, 311, 513
StyI	CCWWGG	1 cut(s)	577
TaqI	TCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	74, 147, 407
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	236, 316, 630
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	469, 573
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	216, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.