Rorug07G0081700

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004283
Physical Location & Seq
Reverse (-)
6418419 .. 6420273
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0081700.1

Sequence Viewer

Length: 1425 bp
ATGGAGCCTTCTTCTAGCTTCTGTTCTTCAATGTTCTCACTCGTTCTGCTAATTTCAGGGTTTATGTACGCTGGAGTGGTGAATTCAATCGGAATTAACTACGGCCAAATCGCAAACAACTTACCTTCGCCGGACTCGGTGGTGCCGTTGGCCAAATCCATCGGAATCACCAGGATCAAGCTCTACGACGCCGATCCCAAGGTGCTGAAGGCGTTCGCCAACAGCGGAGTGGAGTTCACAGTGTGCGTGGGGAATGAGTACCTCGCCAAGATCCAAGACCCGGCCAAGGCCCAGGAGTGGGTCAAGTCCAACGTCCAGGCTTTCATGCCGGCCACCAAGATCACCTGCATCTTCGTCGGAAACGAAGTCCTCACCTTCAACGACACGACGATGACCGGCAACCTCCTCCCGGCGATGCAGAGCATCCACACCGCGCTCGTCGCTCTGGGCCTGGACAAGCAGGTCGCCGTCACCACCGCCCATTCCCTCTCCATTCTCGAAACCTCTTTCCCGCCGTCGGCCGGAGCATTCCGCCGGGATCTGAAAAACTGCATATCTCCGATCCTCGATTTCCACGCCAAAACCGGATCTCCGTTCCTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCTAAACAAGTGCCGCTGGACTACGTCCTCTTCCAGCCCAACGCCGGTTCGCTGGATCCGGCCACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCGTCTACGCCGCCCTCGGATCCCTCGGCTACAAGAAGCTCCCGGTACACATCTCCGAGACCGGCTGGCCGTCCAAAGGCGACGAGGACGAGGCCGGAGCCACGCCGGAGAATGCGAAGAAGTACAATGGGAATCTGATCAAGCTCATTTGCCAGAACAAAGGCACGCCGTTGAGGCCGAGCTCGGATCTGAACATCTACGTCTTCGCTCTGTTCAACGAGAACATGAAACCCGGCCCGAGCTCCGAGAGGAACTTCGGGCTTTTGAAACCCGACGGAACTCCGGCGTACTCGCTCGGATTCGCGTTGAACAGTAGCTCAAGTGGTAAGGGTAACGGTAACAGTAACAGCTCCTCCGGGTCGGGTCAGGGTGGGATTAACCCGATTACTATTGGATCGTCGCCACCCGGTTCTTCCAGTAACGGCTACTTGTCCGTTTCATCAGCCCCCGCCACTAAAACGACGTCGTCGGCATCTGGCACTAACATAAATGCGACAACGCCGTGTCGTCAGCTTCACATGGTTTTTGTAGGAAGTGTTGCTGGAAGCCACATTTGTCGAAGAGAGGTACCATTTGATCGGATCGATTCCCATGTTGTGGTTGCTCCTGTTGTTGGTAAAAGTCCTTTGAAGTTGGAGATAAAAGCTGAGAGCAAATCAATCAGAAAAATCAGATGTGAATGA

Protein Analysis

474

Amino Acids

50.39

Weight (kDa)

8.73

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 30 - 348 8.2e-87 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
AasI GACNNNNNNGTC 1 cut(s) 461
AatII GACGTC 1 cut(s) 1208
Acc36I ACCTGC 2 cut(s) 353, 451
Acc65I GGTACC 1 cut(s) 1309
AccB1I GGYRCC 2 cut(s) 142, 1309
AccB7I CCANNNNNTGG 1 cut(s) 1339
AccI GTMKAC 1 cut(s) 747
AccII CGCG 2 cut(s) 434, 1046
AciI CCGC 8 cut(s) 225, 432, 477, 512, 532, 650, 753, 1191
AcoI YGGCCR 7 cut(s) 103, 150, 282, 330, 519, 696, 809
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 3 cut(s) 189, 741, 1205
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 6 cut(s) 68, 260, 789, 866, 1031, 1311
AgsI TTSAA 7 cut(s) 30, 87, 379, 958, 1009, 1051, 1372
AjnI CCWGG 4 cut(s) 170, 291, 315, 450
Alw21I GWGCWC 2 cut(s) 926, 986
Alw26I GTCTC 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 979
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 212
Asp718I GGTACC 1 cut(s) 1309
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 289, 448, 977
AsuC2I CCSGG 7 cut(s) 281, 410, 536, 785, 975, 1099, 1149
AsuHPI GGTGA 5 cut(s) 91, 160, 334, 364, 463
AvaI CYCGRG 1 cut(s) 979
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 2 cut(s) 691, 761
BanI GGYRCC 2 cut(s) 142, 1309
BanII GRGCYC 2 cut(s) 926, 986
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 2 cut(s) 926, 986
BccI CCATC 1 cut(s) 167
BceAI ACGGC 9 cut(s) 118, 130, 452, 499, 728, 796, 895, 1180, 1228
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 4 cut(s) 172, 293, 317, 452
BclI TGATCA 2 cut(s) 600, 879
BcnI CCSGG 7 cut(s) 281, 410, 536, 785, 975, 1099, 1149
BcoDI GTCTC 1 cut(s) 794
BfaI CTAG 1 cut(s) 15
BfuAI ACCTGC 2 cut(s) 353, 451
BglI GCCNNNNNGGC 1 cut(s) 916
BisI GCNGC 2 cut(s) 650, 753
BlsI GCNGC 2 cut(s) 651, 754
BmeT110I CYCGRG 1 cut(s) 979
BmgT120I GGNCC 3 cut(s) 289, 448, 977
BmiI GGNNCC 6 cut(s) 6, 144, 693, 763, 841, 1311
BmsI GCATC 4 cut(s) 357, 405, 432, 1223
BpiI GAAGAC 1 cut(s) 937
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 1045
BpuMI CCSGG 7 cut(s) 281, 410, 536, 785, 975, 1099, 1149
Bsa29I ATCGAT 1 cut(s) 1326
BsaHI GRCGYC 3 cut(s) 189, 741, 1205
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 5 cut(s) 198, 285, 291, 757, 766
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 4 cut(s) 574, 604, 1079, 1109
Bse118I RCCGGY 4 cut(s) 328, 395, 680, 803
Bse1I ACTGG 1 cut(s) 1158
BseBI CCWGG 4 cut(s) 172, 293, 317, 452
BseCI ATCGAT 1 cut(s) 1326
BseDI CCNNGG 5 cut(s) 198, 285, 291, 757, 766
BseGI GGATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 1380
BseNI ACTGG 1 cut(s) 1158
BseRI GAGGAG 2 cut(s) 395, 1084
BseX3I CGGCCG 1 cut(s) 519
Bsh1236I CGCG 2 cut(s) 434, 1046
Bsh1285I CGRYCG 1 cut(s) 522
BshNI GGYRCC 2 cut(s) 142, 1309
BshVI ATCGAT 1 cut(s) 1326
BsiEI CGRYCG 1 cut(s) 522
BsiHKAI GWGCWC 2 cut(s) 926, 986
BsiHKCI CYCGRG 1 cut(s) 979
BsmAI GTCTC 1 cut(s) 794
BsmI GAATGC 2 cut(s) 527, 859
Bso31I GGTCTC 1 cut(s) 794
BsoBI CYCGRG 1 cut(s) 979
Bsp1286I GDGCHC 2 cut(s) 926, 986
BspACI CCGC 8 cut(s) 225, 432, 477, 512, 532, 650, 753, 1191
BspCNI CTCAG 1 cut(s) 1381
BspDI ATCGAT 1 cut(s) 1326
BspFNI CGCG 2 cut(s) 434, 1046
BspLI GGNNCC 6 cut(s) 6, 144, 693, 763, 841, 1311
BspMI ACCTGC 2 cut(s) 353, 451
BspQI GCTCTTC 1 cut(s) 731
BspT107I GGYRCC 2 cut(s) 142, 1309
BspTNI GGTCTC 1 cut(s) 794
BsrFI RCCGGY 4 cut(s) 328, 395, 680, 803
BsrI ACTGG 1 cut(s) 1158
BssAI RCCGGY 4 cut(s) 328, 395, 680, 803
BssECI CCNNGG 5 cut(s) 198, 285, 291, 757, 766
BssNI GRCGYC 3 cut(s) 189, 741, 1205
BssT1I CCWWGG 2 cut(s) 198, 285
Bst2UI CCWGG 4 cut(s) 172, 293, 317, 452
Bst4CI ACNGT 4 cut(s) 241, 1055, 1079, 1085
Bst6I CTCTTC 3 cut(s) 671, 731, 1297
BstACI GRCGYC 3 cut(s) 189, 741, 1205
BstC8I GCNNGC 3 cut(s) 330, 809, 908
BstDEI CTNAG 1 cut(s) 1389
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 2 cut(s) 434, 1046
BstHHI GCGC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 794
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 3 cut(s) 440, 749, 916
BstNI CCWGG 4 cut(s) 172, 293, 317, 452
BstNSI RCATGY 1 cut(s) 724
BstUI CGCG 2 cut(s) 434, 1046
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 6 cut(s) 270, 538, 587, 691, 761, 928
BstYI RGATCY 6 cut(s) 270, 538, 587, 691, 761, 928
BstZI CGGCCG 1 cut(s) 519
Bsu15I ATCGAT 1 cut(s) 1326
BsuTUI ATCGAT 1 cut(s) 1326
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 2 cut(s) 353, 451
Cac8I GCNNGC 3 cut(s) 330, 809, 908
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 4 cut(s) 328, 395, 680, 803
Cfr13I GGNCC 3 cut(s) 289, 448, 977
ClaI ATCGAT 1 cut(s) 1326
CseI GACGC 2 cut(s) 197, 749
Csp6I GTAC 6 cut(s) 67, 259, 788, 865, 1030, 1310
CviAII CATG 5 cut(s) 325, 721, 967, 1261, 1334
CviQI GTAC 6 cut(s) 67, 259, 788, 865, 1030, 1310
DdeI CTNAG 1 cut(s) 1389
DraIII CACNNNGTG 1 cut(s) 243
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
EaeI YGGCCR 7 cut(s) 103, 150, 282, 330, 519, 696, 809
EagI CGGCCG 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 671, 731, 1297
EarI CTCTTC 3 cut(s) 671, 731, 1297
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 2 cut(s) 924, 984
EclXI CGGCCG 1 cut(s) 519
Eco130I CCWWGG 2 cut(s) 198, 285
Eco24I GRGCYC 2 cut(s) 926, 986
Eco31I GGTCTC 1 cut(s) 794
Eco52I CGGCCG 1 cut(s) 519
Eco53kI GAGCTC 2 cut(s) 924, 984
Eco57I CTGAAG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 979
EcoICRI GAGCTC 2 cut(s) 924, 984
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 4 cut(s) 170, 291, 315, 450
EcoT14I CCWWGG 2 cut(s) 198, 285
EcoT38I GRGCYC 2 cut(s) 926, 986
ErhI CCWWGG 2 cut(s) 198, 285
FaeI CATG 5 cut(s) 328, 724, 970, 1264, 1337
FaiI YATR 8 cut(s) 65, 326, 554, 722, 968, 1229, 1262, 1335
FatI CATG 5 cut(s) 324, 720, 966, 1260, 1333
FauI CCCGC 2 cut(s) 519, 1198
FbaI TGATCA 2 cut(s) 600, 879
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 2 cut(s) 650, 753
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 2 cut(s) 926, 986
Fsp4HI GCNGC 2 cut(s) 650, 753
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 650, 753
GsuI CTGGAG 1 cut(s) 93
HgaI GACGC 2 cut(s) 197, 749
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 3 cut(s) 189, 741, 1205
Hin1II CATG 5 cut(s) 328, 724, 970, 1264, 1337
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 5 cut(s) 134, 165, 874, 1041, 1328
HphI GGTGA 5 cut(s) 91, 160, 334, 364, 463
Hpy166II GTNNAC 3 cut(s) 237, 748, 790
Hpy188III TCNNGA 2 cut(s) 497, 598
Hpy8I GTNNAC 3 cut(s) 237, 748, 790
HpyAV CCTTC 4 cut(s) 18, 135, 202, 385
HpyCH4III ACNGT 4 cut(s) 241, 1055, 1079, 1085
HpyCH4IV ACGT 4 cut(s) 312, 660, 942, 1205
HpyCH4V TGCA 3 cut(s) 348, 418, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 749, 916
HpyF3I CTNAG 1 cut(s) 1389
HpySE526I ACGT 4 cut(s) 312, 660, 942, 1205
Hsp92I GRCGYC 3 cut(s) 189, 741, 1205
Hsp92II CATG 5 cut(s) 328, 724, 970, 1264, 1337
HspAI GCGC 1 cut(s) 434
KpnI GGTACC 1 cut(s) 1313
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
Ksp22I TGATCA 2 cut(s) 600, 879
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 7 cut(s) 4, 524, 786, 839, 989, 1097, 1351
LweI GCATC 4 cut(s) 357, 405, 432, 1223
MaeI CTAG 1 cut(s) 15
MaeII ACGT 4 cut(s) 312, 660, 942, 1205
MaeIII GTNAC 5 cut(s) 469, 1073, 1079, 1085, 1160
MboII GAAGA 9 cut(s) 3, 18, 343, 658, 718, 871, 937, 1146, 1314
MflI RGATCY 6 cut(s) 270, 538, 587, 691, 761, 928
MhlI GDGCHC 2 cut(s) 926, 986
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 3 cut(s) 51, 82, 93
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 3 cut(s) 333, 337, 1356
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 152
MseI TTAA 2 cut(s) 96, 1119
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 225, 652
Mva1269I GAATGC 2 cut(s) 527, 859
MvaI CCWGG 4 cut(s) 172, 293, 317, 452
MvnI CGCG 2 cut(s) 434, 1046
MwoI GCNNNNNNNGC 3 cut(s) 440, 749, 916
NaeI GCCGGC 1 cut(s) 330
NciI CCSGG 7 cut(s) 281, 410, 536, 785, 975, 1099, 1149
NgoMIV GCCGGC 1 cut(s) 328
NlaIII CATG 5 cut(s) 328, 724, 970, 1264, 1337
NlaIV GGNNCC 6 cut(s) 6, 144, 693, 763, 841, 1311
NmeAIII GCCGAG 2 cut(s) 747, 945
NmuCI GTSAC 1 cut(s) 469
NspI RCATGY 1 cut(s) 724
PaqCI CACCTGC 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 731
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 360, 735
PctI GAATGC 2 cut(s) 527, 859
PdiI GCCGGC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 4 cut(s) 165, 874, 1041, 1328
PflFI GACNNNGTC 3 cut(s) 659, 743, 1207
PflMI CCANNNNNTGG 1 cut(s) 1339
PkrI GCNGC 2 cut(s) 651, 754
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 2 cut(s) 926, 986
Psp6I CCWGG 4 cut(s) 170, 291, 315, 450
PspGI CCWGG 4 cut(s) 170, 291, 315, 450
PspN4I GGNNCC 6 cut(s) 6, 144, 693, 763, 841, 1311
PspPI GGNCC 3 cut(s) 289, 448, 977
PsuI RGATCY 6 cut(s) 270, 538, 587, 691, 761, 928
PsyI GACNNNGTC 3 cut(s) 659, 743, 1207
RsaI GTAC 6 cut(s) 68, 260, 789, 866, 1031, 1311
RsaNI GTAC 6 cut(s) 67, 259, 788, 865, 1030, 1310
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 2 cut(s) 926, 986
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 2 cut(s) 96, 1119
SatI GCNGC 2 cut(s) 650, 753
Sau96I GGNCC 3 cut(s) 289, 448, 977
SchI GAGTC 1 cut(s) 128
SduI GDGCHC 2 cut(s) 926, 986
SfaNI GCATC 4 cut(s) 357, 405, 432, 1223
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 1060
SmoI CTYRAG 1 cut(s) 1060
Sse9I AATT 3 cut(s) 51, 82, 93
SsiI CCGC 8 cut(s) 225, 432, 477, 512, 532, 650, 753, 1191
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 2 cut(s) 926, 986
StyI CCWWGG 2 cut(s) 198, 285
TaaI ACNGT 4 cut(s) 241, 1055, 1079, 1085
TaiI ACGT 4 cut(s) 315, 663, 945, 1208
TaqI TCGA 6 cut(s) 498, 567, 632, 738, 1300, 1326
TasI AATT 3 cut(s) 51, 82, 93
TatI WGTACW 1 cut(s) 864
TauI GCSGC 2 cut(s) 652, 755
TfiI GAWTC 4 cut(s) 165, 874, 1041, 1328
Tru1I TTAA 2 cut(s) 96, 1119
Tru9I TTAA 2 cut(s) 96, 1119
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 313, 983, 1170
TspGWI ACGGA 3 cut(s) 582, 1032, 1165
TspRI CASTG 1 cut(s) 246
Tth111I GACNNNGTC 3 cut(s) 659, 743, 1207
Van91I CCANNNNNTGG 1 cut(s) 1339
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 747
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.