Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Forward (+)

1269817 .. 1272188

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1020900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTCGGAAAATCTTGCTTGCTGTTGCAATTCACGGATAAGAGGTTCCAGCCTGTGCATGATCTTACCATCGGTGTCGAGTTCGGAGCTCGAATGGTCACCATCGATGGTCGTCCTATCAAGCTCCAGATTTGGGACACCGCTGGGCAAGAATCTTTCAGATCGATCACTAGGTCTTACTACAGAGGAGCAGCCGGAGCGCTTCTGGTCTATGACATAACTAGGAGGGAGACATTTAATCATCTTGCGAGCTGGCTGGAGGATGCCCGGCAGCATGCAAATCCTAACATGACGATCATGCTCATAGGGAACAAGTGTGATCTGTCGCACCGAAGAGCTGTCAGCAAAGAGGAAGGAGAGCAATTTGCAAAGGAGAATGGGCTTTTATTCTTGGAGGCATCTGCAAGGACGGCACAAAACGTGGAGGAGGCCTTCATAAAGACTGCTGCAAAGATTCTTCAGAATATTCAGGAAGGCGTATTCGACGTATCTAATGAGTCATCTGGCATCAAGGTCGGATATGGCCGGCCCCAGGGTCAATCAGGCTCAGGCGGAACGGTTGCTCAGAGGGGCGGATGTTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.21

Weight (kDa)

7.68

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 158	9.1e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	1.6e-63	Ras family
Roc	PF08477	8 - 122	1.1e-32	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AciI	CCGC	3 cut(s)	186, 597, 618
AcoI	YGGCCR	1 cut(s)	568
AcuI	CTGAAG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	178, 577
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	576
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	134, 169, 297, 383, 630
AluI	AGCT	5 cut(s)	134, 169, 297, 383, 630
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	269
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	3 cut(s)	474, 568, 572
ApeKI	GCWGC	4 cut(s)	236, 316, 491, 627
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	248, 328, 478
BccI	CCATC	3 cut(s)	122, 146, 155
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	1 cut(s)	578
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	216, 267
BfmI	CTRYAG	1 cut(s)	226
BfoI	RGCGCY	1 cut(s)	248
BisI	GCNGC	4 cut(s)	237, 317, 492, 628
BlsI	GCNGC	4 cut(s)	238, 318, 493, 629
Bme1390I	CCNGG	2 cut(s)	313, 578
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	92, 575
BmrFI	CCNGG	2 cut(s)	313, 578
BmsI	GCATC	3 cut(s)	298, 452, 561
BpmI	CTGGAG	2 cut(s)	155, 323
Bpu10I	CCTNAGC	1 cut(s)	592
BpuMI	CCSGG	1 cut(s)	313
Bsa29I	ATCGAT	2 cut(s)	150, 209
BsaJI	CCNNGG	2 cut(s)	576, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 577
Bse118I	RCCGGY	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	578
BseCI	ATCGAT	2 cut(s)	150, 209
BseDI	CCNNGG	2 cut(s)	576, 577
BseGI	GGATG	2 cut(s)	313, 626
BseLI	CCNNNNNNNGG	2 cut(s)	178, 577
BseMII	CTCAG	2 cut(s)	606, 623
BseRI	GAGGAG	2 cut(s)	246, 485
BseXI	GCAGC	3 cut(s)	248, 328, 478
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	3 cut(s)	476, 570, 574
BshVI	ATCGAT	2 cut(s)	150, 209
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	3 cut(s)	240, 313, 571
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	178, 577
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	476, 570, 574
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	5 cut(s)	106, 206, 210, 339, 364
BspACI	CCGC	3 cut(s)	186, 597, 618
BspANI	GGCC	3 cut(s)	476, 570, 574
BspCNI	CTCAG	2 cut(s)	605, 622
BspDI	ATCGAT	2 cut(s)	150, 209
BspLI	GGNNCC	2 cut(s)	92, 575
BspQI	GCTCTTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	570
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	576, 577
BssMI	GATC	5 cut(s)	106, 206, 210, 339, 364
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	2 cut(s)	23, 373
BstC8I	GCNNGC	5 cut(s)	65, 295, 299, 321, 572
BstDEI	CTNAG	2 cut(s)	592, 609
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	313, 626
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	5 cut(s)	109, 209, 213, 342, 367
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	5 cut(s)	106, 206, 210, 339, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	311, 576
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	248, 328, 478
Bsu15I	ATCGAT	2 cut(s)	150, 209
BsuRI	GGCC	3 cut(s)	476, 570, 574
BsuTUI	ATCGAT	2 cut(s)	150, 209
BtsCI	GGATG	2 cut(s)	313, 626
Cac8I	GCNNGC	5 cut(s)	65, 295, 299, 321, 572
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	1 cut(s)	573
ClaI	ATCGAT	2 cut(s)	150, 209
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	104, 320, 334, 343
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	592, 609
DpnI	GATC	5 cut(s)	108, 208, 212, 341, 366
DpnII	GATC	5 cut(s)	106, 206, 210, 339, 364
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	23, 373
EarI	CTCTTC	2 cut(s)	23, 373
EciI	GGCGGA	2 cut(s)	612, 633
Ecl136II	GAGCTC	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	488
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	4 cut(s)	107, 323, 337, 346
FaiI	YATR	9 cut(s)	105, 258, 263, 321, 335, 344, 350, 482, 567
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	103, 319, 333, 342
Fnu4HI	GCNGC	4 cut(s)	237, 317, 492, 628
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	136
FseI	GGCCGGCC	1 cut(s)	574
Fsp4HI	GCNGC	4 cut(s)	237, 317, 492, 628
FspBI	CTAG	2 cut(s)	216, 267
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	4 cut(s)	237, 317, 492, 628
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	155, 323
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	476, 570, 574
HapII	CCGG	3 cut(s)	240, 313, 571
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	107, 323, 337, 346
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	3 cut(s)	197, 499, 542
HpaII	CCGG	3 cut(s)	240, 313, 571
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	53, 131, 206, 507, 563, 612
Hpy188III	TCNNGA	2 cut(s)	172, 515
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	392, 487, 512
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	465, 531
HpyCH4V	TGCA	7 cut(s)	73, 103, 323, 413, 449, 494, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
HpyF3I	CTNAG	2 cut(s)	592, 609
HpySE526I	ACGT	2 cut(s)	465, 531
Hsp92II	CATG	4 cut(s)	107, 323, 337, 346
HspAI	GCGC	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	570
KroNI	GCCGGC	1 cut(s)	572
Kzo9I	GATC	5 cut(s)	106, 206, 210, 339, 364
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	4 cut(s)	131, 174, 233, 242
Lsp1109I	GCAGC	3 cut(s)	248, 328, 478
LweI	GCATC	3 cut(s)	298, 452, 561
MaeI	CTAG	2 cut(s)	216, 267
MaeII	ACGT	2 cut(s)	465, 531
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	108, 208, 212, 341, 366
MboI	GATC	5 cut(s)	106, 206, 210, 339, 364
MboII	GAAGA	3 cut(s)	10, 390, 494
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	74, 407
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	2 cut(s)	31, 541
MroNI	GCCGGC	1 cut(s)	570
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	188, 630
MspI	CCGG	3 cut(s)	240, 313, 571
MspR9I	CCNGG	2 cut(s)	313, 578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	242, 455, 624
NaeI	GCCGGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	313
NdeII	GATC	5 cut(s)	106, 206, 210, 339, 364
NgoMIV	GCCGGC	1 cut(s)	570
NlaIII	CATG	4 cut(s)	107, 323, 337, 346
NlaIV	GGNNCC	2 cut(s)	92, 575
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PasI	CCCWGGG	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	373
PdiI	GCCGGC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	197, 499
PkrI	GCNGC	4 cut(s)	238, 318, 493, 629
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	576
PspEI	GGTNACC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	2 cut(s)	92, 575
PspPI	GGNCC	1 cut(s)	573
PvuII	CAGCTG	1 cut(s)	630
RigI	GGCCGGCC	1 cut(s)	574
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	237, 317, 492, 628
Sau3AI	GATC	5 cut(s)	106, 206, 210, 339, 364
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	313, 578
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	3 cut(s)	298, 452, 561
SfcI	CTRYAG	1 cut(s)	226
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	74, 407
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	3 cut(s)	186, 597, 618
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	216, 267
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	311, 576
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	2 cut(s)	468, 534
TaqI	TCGA	5 cut(s)	123, 136, 150, 209, 528
TasI	AATT	2 cut(s)	74, 407
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	197, 499
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	236, 316, 491, 627
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	95
XceI	RCATGY	1 cut(s)	323
XspI	CTAG	2 cut(s)	216, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.