Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

38445329 .. 38447368

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTACGACTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGTAGGGAAATCGTGCCTGCTCCTGCAATTCACGGACAAGCGGTTCCAGCCTGTTCATGATCTCACCATCGGCGTCGAGTTCGGAGCTCGCATGGTCACAATTGAAACCCGCCCCATCAAGCTTCAGATTTGGGACACTGCTGGGCAGGAGTCCTTCAGGTCCATTACTAGATCCTATTACAGAGGAGCAGCTGGGGCACTGCTGGTTTATGACATAACCAGGAGGGAGACATTTAATCATCTGGCAAGCTGGCTAGAGGATGCTCGGCAGCATGCAAATCCTAACATGTCAATAATGCTGGTCGGGAACAAGTGTGATCTTGCTCATAGAAGGGCTGTCAGCAGAGAGGAAGGGGAGCAATTTGCAAAGGAGAATGGGCTTTTATTCTTGGAGGCATCTGCAAGAACTGCTCAAAATGTCGAGGAGGCCTTCATAAAGACTGCCGCAAAGATTCTTCAAAATATCCAGGATGGTGTGTTTGATGTATCAAATGAGTCATCTGGTATCAAGGTTGGATATGGACGCTCACAAGGTCCATCAGGCGCGAGAGATGGAGCTGTTGCTCAAAGAAGCGGATGTTGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

7.68

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 155	5.2e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	7.5e-63	Ras family
Roc	PF08477	8 - 122	5.5e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	593
AciI	CCGC	4 cut(s)	88, 157, 492, 621
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	155, 187
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	22, 152, 506
AjnI	CCWGG	2 cut(s)	266, 513
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	6 cut(s)	134, 169, 239, 297, 605, 633
AluI	AGCT	6 cut(s)	134, 169, 239, 297, 605, 633
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	236, 316, 630
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	2 cut(s)	207, 581
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	207, 581
BaeGI	GKGCMC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	248, 328
BccI	CCATC	5 cut(s)	122, 170, 512, 592, 593
BciT130I	CCWGG	2 cut(s)	268, 515
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	216, 302
BisI	GCNGC	4 cut(s)	237, 317, 492, 631
BlsI	GCNGC	4 cut(s)	238, 318, 493, 632
Bme1390I	CCNGG	2 cut(s)	268, 515
Bme18I	GGWCC	2 cut(s)	207, 581
BmgT120I	GGNCC	2 cut(s)	207, 581
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	268, 515
BmsI	GCATC	2 cut(s)	298, 452
BsaHI	GRCGYC	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	268, 515
BseGI	GGATG	3 cut(s)	313, 523, 629
BseRI	GAGGAG	2 cut(s)	246, 485
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	248, 328
BseYI	CCCAGC	2 cut(s)	188, 239
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	136, 247
Bsp143I	GATC	3 cut(s)	106, 218, 364
BspACI	CCGC	4 cut(s)	88, 157, 492, 621
BspANI	GGCC	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	213
BssMI	GATC	3 cut(s)	106, 218, 364
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	268, 515
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	5 cut(s)	65, 136, 295, 299, 321
BstF5I	GGATG	3 cut(s)	313, 523, 629
BstFNI	CGCG	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	3 cut(s)	109, 221, 367
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	106, 218, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 242, 455, 627
BstNI	CCWGG	2 cut(s)	268, 515
BstNSI	RCATGY	2 cut(s)	323, 337
BstSCI	CCNGG	2 cut(s)	266, 513
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	248, 328
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	3 cut(s)	313, 523, 629
BtsI	GCAGTG	2 cut(s)	183, 245
BtsIMutI	CAGTG	2 cut(s)	183, 245
Cac8I	GCNNGC	5 cut(s)	65, 136, 295, 299, 321
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	207, 581
CseI	GACGC	2 cut(s)	109, 579
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	4 cut(s)	104, 139, 320, 334
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	3 cut(s)	108, 220, 366
DpnII	GATC	3 cut(s)	106, 218, 364
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	134
Eco147I	AGGCCT	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	207, 581
Eco53kI	GAGCTC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	155, 187
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	266, 513
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	4 cut(s)	107, 142, 323, 337
FaiI	YATR	9 cut(s)	105, 140, 258, 263, 321, 335, 375, 482, 567
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	103, 138, 319, 333
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	237, 317, 492, 631
FokI	GGATG	2 cut(s)	320, 530
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	4 cut(s)	237, 317, 492, 631
FspBI	CTAG	2 cut(s)	216, 302
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	4 cut(s)	237, 317, 492, 631
GsaI	CCCAGC	2 cut(s)	192, 243
HaeIII	GGCC	1 cut(s)	476
HgaI	GACGC	2 cut(s)	109, 579
HhaI	GCGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	107, 142, 323, 337
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	197, 499, 542
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	131, 174
Hpy188III	TCNNGA	2 cut(s)	104, 352
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	211, 372, 392, 487
HpyCH4V	TGCA	5 cut(s)	73, 323, 413, 449, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 242, 455, 627
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	107, 142, 323, 337
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	106, 218, 364
LmnI	GCTCC	5 cut(s)	72, 131, 233, 403, 602
Lsp1109I	GCAGC	2 cut(s)	248, 328
LweI	GCATC	2 cut(s)	298, 452
MaeI	CTAG	2 cut(s)	216, 302
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	108, 220, 366
MboI	GATC	3 cut(s)	106, 218, 364
MboII	GAAGA	2 cut(s)	10, 494
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	136, 247
MluCI	AATT	3 cut(s)	74, 147, 407
MlyI	GAGTC	2 cut(s)	206, 551
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	8 cut(s)	26, 224, 264, 298, 388, 433, 463, 466
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	268, 515
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	268, 515
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	4 cut(s)	94, 242, 455, 627
NdeII	GATC	3 cut(s)	106, 218, 364
NlaIII	CATG	4 cut(s)	107, 142, 323, 337
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	323, 337
PaeI	GCATGC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	476
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	238, 318, 493, 632
PleI	GAGTC	2 cut(s)	205, 550
PpsI	GAGTC	2 cut(s)	205, 550
PscI	ACATGT	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	266, 513
PspFI	CCCAGC	2 cut(s)	188, 239
PspGI	CCWGG	2 cut(s)	266, 513
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	207, 581
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	237, 317, 492, 631
Sau3AI	GATC	3 cut(s)	106, 218, 364
Sau96I	GGNCC	2 cut(s)	207, 581
SchI	GAGTC	2 cut(s)	206, 551
ScrFI	CCNGG	2 cut(s)	268, 515
SduI	GDGCHC	2 cut(s)	136, 247
SfaNI	GCATC	2 cut(s)	298, 452
SinI	GGWCC	2 cut(s)	207, 581
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	74, 147, 407
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	4 cut(s)	88, 157, 492, 621
SspMI	CTAG	2 cut(s)	216, 302
SstI	GAGCTC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	266, 513
TaqI	TCGA	2 cut(s)	123, 468
TasI	AATT	3 cut(s)	74, 147, 407
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	190, 252
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	236, 316, 630
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	92, 469
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	190, 252
VpaK11BI	GGWCC	2 cut(s)	207, 581
XceI	RCATGY	2 cut(s)	323, 337
XspI	CTAG	2 cut(s)	216, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.