Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004283

Physical Location & Seq

Genomic Coordinates Reverse (-)

16986840 .. 16989047

Gene Structure 2208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTACGATTATCTCTTCAAGTACATAATCATCGGAGACACAGGTGTGGGAAAATCGTGTCTGCTTCTGCAATTTACTGATAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGTGTTGAGTTCGGTGCTCGGATGGTCACCGTCGATGGACGCCCCATCAAACTCCAAATTTGGGACACCGCTGGACAAGAATCTTTTAGATCCATCACCAGATCATACTACAGAGGAGCAGCCGGAGCTTTACTGGTTTATGACATCACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTGGTTGGAGGATGCTCGGCAACATGCAAATCCTAACATGAGTATTATGCTGATTGGGAACAAATGTGATCTTGCTCACAAGAGAGCTGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAAAGAACATGGCCTGCTATTCTTAGAAGCATCTGCAAGAACTGCTCAAAACGTTGAGGAGGCCTTCATAGAGACTGCTGCCAAGATCCTCCAGAACATTCAGGATGGTGTCTTTGATGTATCCAACGAGTCATCAGGTATCAAGATTGGTTACGGGCGTACTCAAGGTGCAGCTGGAGGAAGAGATGGTACGATCTCTCAGGGAGGTGGCTGTTGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0008150 GO:0009507 GO:0009536 GO:0012505 GO:0017076 GO:0019001 GO:0030100 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

211

Amino Acids

23.17

Weight (kDa)

6.52

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	7 - 156	8.7e-12	ADP-ribosylation factor family
Ras	PF00071	8 - 168	8.5e-64	Ras family
Roc	PF08477	8 - 122	1.4e-32	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17170 AT4G35860 AT4G35860
fragaria_vesca	FvH4_5g19600 FvH4_6g52020 FvH4_6g52020
malus_domestica	MD09G1020900.v1.1 MD17G1021100.v1.1
prunus_persica	Prupe.3G295400_v2.0.a1
pyrus_communis	pycom17g01790
rosa_chinensis	RchiOBHm_Chr2g0173481 RchiOBHm_Chr7g0204281 RchiOBHm_Chr7g0204291
rosa_laevigata	RLG00000003475 RLG00000003476 RLG00000022194
rosa_multiflora	Rmu_sc0002918.1_g000013 Rmu_sc0002918.1_g000014 Rmu_sc0002918.1_g000015 Rmu_sc0015861.1_g000003 Rmu_sc0015861.1_g000004
rosa_roxburghii	Rroxscaffold_3G00253250
rosa_rugosa	Rorug02G0571100 Rorug07G0081600 Rorug07G0081700
rosa_samantha	Rh2AG649300 Rh2CG625100 Rh7BG210400 Rh7DG219100 Rh7DG219200
rosa_wichuraiana	Rw2G053310 Rw7G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	2 cut(s)	201, 493
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	3 cut(s)	26, 574, 604
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	266
AleI	CACNNNNGTG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	245, 297, 383, 587
AluI	AGCT	4 cut(s)	245, 297, 383, 587
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	3 cut(s)	33, 269, 479
AlwI	GGATC	2 cut(s)	201, 493
AoxI	GGCC	2 cut(s)	424, 474
ApeKI	GCWGC	3 cut(s)	236, 491, 584
ApoI	RAATTY	1 cut(s)	174
AsuHPI	GGTGA	4 cut(s)	103, 136, 205, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	586, 618
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	248, 478, 596
BccI	CCATC	7 cut(s)	133, 146, 170, 218, 294, 512, 593
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	544
BcoDI	GTCTC	3 cut(s)	33, 269, 479
BfmI	CTRYAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	3 cut(s)	237, 492, 585
BlsI	GCNGC	3 cut(s)	238, 493, 586
Bme1390I	CCNGG	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	298, 452
BpmI	CTGGAG	2 cut(s)	488, 609
BpuEI	CTTGAG	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	98, 255
BseBI	CCWGG	1 cut(s)	268
BseGI	GGATG	3 cut(s)	144, 313, 523
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	98, 255
BseRI	GAGGAG	2 cut(s)	246, 485
BseXI	GCAGC	3 cut(s)	248, 478, 596
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	426, 476
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	33, 269, 479
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	426, 476
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	426, 476
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	201, 493
BsrI	ACTGG	2 cut(s)	98, 255
BssMI	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
BssNI	GRCGYC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	148, 408
Bst6I	CTCTTC	2 cut(s)	23, 589
BstACI	GRCGYC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	295, 428
BstDEI	CTNAG	2 cut(s)	436, 612
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	144, 313, 523
BstKTI	GATC	6 cut(s)	109, 209, 221, 367, 501, 609
BstMAI	GTCTC	3 cut(s)	33, 269, 479
BstMBI	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 455
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	248, 478, 596
BstX2I	RGATCY	2 cut(s)	206, 498
BstYI	RGATCY	2 cut(s)	206, 498
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	426, 476
BtsCI	GGATG	3 cut(s)	144, 313, 523
Cac8I	GCNNGC	2 cut(s)	295, 428
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	25, 573, 603
CviAII	CATG	3 cut(s)	320, 334, 422
CviJI	RGCY	8 cut(s)	239, 245, 297, 383, 426, 476, 587, 624
CviKI_1	RGCY	8 cut(s)	239, 245, 297, 383, 426, 476, 587, 624
CviQI	GTAC	3 cut(s)	25, 573, 603
DdeI	CTNAG	2 cut(s)	436, 612
DpnI	GATC	6 cut(s)	108, 208, 220, 366, 500, 608
DpnII	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
Eam1104I	CTCTTC	2 cut(s)	23, 589
EarI	CTCTTC	2 cut(s)	23, 589
Eco147I	AGGCCT	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	3 cut(s)	323, 337, 425
FaiI	YATR	8 cut(s)	29, 223, 258, 321, 335, 344, 423, 482
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	319, 333, 421
Fnu4HI	GCNGC	3 cut(s)	237, 492, 585
FokI	GGATG	3 cut(s)	151, 320, 530
Fsp4HI	GCNGC	3 cut(s)	237, 492, 585
GluI	GCNGC	3 cut(s)	237, 492, 585
GsuI	CTGGAG	2 cut(s)	488, 609
HaeIII	GGCC	2 cut(s)	426, 476
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	323, 337, 425
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HinfI	GANTC	2 cut(s)	197, 542
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	4 cut(s)	103, 136, 205, 256
Hpy166II	GTNNAC	2 cut(s)	103, 404
Hpy188I	TCNGA	2 cut(s)	38, 138
Hpy188III	TCNNGA	3 cut(s)	505, 515, 556
Hpy8I	GTNNAC	2 cut(s)	103, 404
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	392, 487
HpyCH4III	ACNGT	2 cut(s)	148, 408
HpyCH4IV	ACGT	2 cut(s)	278, 465
HpyCH4V	TGCA	4 cut(s)	73, 323, 449, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 455
HpyF3I	CTNAG	2 cut(s)	436, 612
HpySE526I	ACGT	2 cut(s)	278, 465
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	323, 337, 425
Kzo9I	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
LmnI	GCTCC	2 cut(s)	233, 242
Lsp1109I	GCAGC	3 cut(s)	248, 478, 596
LweI	GCATC	2 cut(s)	298, 452
MaeII	ACGT	2 cut(s)	278, 465
MaeIII	GTNAC	2 cut(s)	142, 563
MalI	GATC	6 cut(s)	108, 208, 220, 366, 500, 608
MboI	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
MboII	GAAGA	2 cut(s)	10, 606
MflI	RGATCY	2 cut(s)	206, 498
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	74, 174
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	3 cut(s)	118, 282, 561
MnlI	CCTC	9 cut(s)	81, 224, 298, 388, 463, 466, 512, 584, 611
MseI	TTAA	2 cut(s)	282, 634
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	188, 587
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	242, 455
NdeII	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
NlaIII	CATG	3 cut(s)	323, 337, 425
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	238, 493, 586
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	206, 498
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	26, 574, 604
RsaNI	GTAC	3 cut(s)	25, 573, 603
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	282, 634
SatI	GCNGC	3 cut(s)	237, 492, 585
Sau3AI	GATC	6 cut(s)	106, 206, 218, 364, 498, 606
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	2 cut(s)	298, 452
SfcI	CTRYAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	74, 174
SseBI	AGGCCT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	148, 408
TaiI	ACGT	2 cut(s)	281, 468
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	74, 174
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	282, 634
Tru9I	TTAA	2 cut(s)	282, 634
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	236, 491, 584
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	469
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.