Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Reverse (-)

10035468 .. 10036647

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGTCCCATTGCTTACCAAGAAGGTTGTGAAGAAGAGGTCTGCTAAGTTCATCAGACCCCAGAGTGACCGTAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTACGGATCTGACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCACAACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCTCACAACGTCTCCACTAAGAAGAGAAAGGCAATTGTTGAGAGAGCTTCTCAGCTAGACGTTGTTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

133

Amino Acids

15.5

Weight (kDa)

10.89

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32e	PF01655	16 - 122	2.8e-48	Ribosomal protein L32

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	123, 142, 217
AluBI	AGCT	4 cut(s)	96, 247, 338, 346
AluI	AGCT	4 cut(s)	96, 247, 338, 346
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	73, 139
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	347, 375
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	9, 380
BmsI	GCATC	2 cut(s)	147, 252
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	276, 356
BseRI	GAGGAG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	277, 355
BspLI	GGNNCC	2 cut(s)	9, 380
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	11
BssMI	GATC	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	74, 85, 281
Bst6I	CTCTTC	2 cut(s)	32, 308
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	4 cut(s)	48, 285, 309, 342
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 376
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	7
CviJI	RGCY	8 cut(s)	96, 106, 247, 338, 346, 370, 379, 387
CviKI_1	RGCY	8 cut(s)	96, 106, 247, 338, 346, 370, 379, 387
DdeI	CTNAG	4 cut(s)	48, 285, 309, 342
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
Eam1104I	CTCTTC	2 cut(s)	32, 308
EarI	CTCTTC	2 cut(s)	32, 308
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	347, 375
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	106
HinfI	GANTC	4 cut(s)	78, 119, 190, 213
HphI	GGTGA	2 cut(s)	73, 139
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	59, 181
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	74, 85, 281
HpyCH4IV	ACGT	2 cut(s)	300, 351
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 376
HpyF3I	CTNAG	4 cut(s)	48, 285, 309, 342
HpySE526I	ACGT	2 cut(s)	300, 351
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	4 cut(s)	77, 82, 256, 352
LweI	GCATC	2 cut(s)	147, 252
MaeI	CTAG	2 cut(s)	347, 375
MaeII	ACGT	2 cut(s)	300, 351
MaeIII	GTNAC	5 cut(s)	68, 148, 170, 194, 358
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	6 cut(s)	46, 49, 144, 194, 199, 325
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	221, 324
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	33, 93, 96
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	290, 376
NdeII	GATC	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	9, 380
NmuCI	GTSAC	3 cut(s)	68, 148, 194
PaeR7I	CTCGAG	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	78, 119, 213
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	9, 380
PspPI	GGNCC	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	30, 44, 98, 148, 249, 303, 340, 348, 354
SfaNI	GCATC	2 cut(s)	147, 252
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	221, 324
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	347, 375
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	74, 85, 281
TaiI	ACGT	2 cut(s)	303, 354
TaqI	TCGA	1 cut(s)	249
TasI	AATT	2 cut(s)	221, 324
TfiI	GAWTC	3 cut(s)	78, 119, 213
TseFI	GTSAC	3 cut(s)	68, 148, 194
Tsp45I	GTSAC	3 cut(s)	68, 148, 194
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	2 cut(s)	189, 371
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	2 cut(s)	347, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.