Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Reverse (-)

8911294 .. 8913459

Gene Structure 2166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCCCAACATTGGTTATGGTTCTGACAAGAAGACCCGCCATTATCTTCCCAATCATTTCAAGAAGTTTGTTGTGCACAATGTCAAGGAGCTAGAAGTTCTGATGATGCACAATAGGACCTATTGTGCCGAGATTGCACACAATATCTCCACTAGGAAGAGGAAGGAAATTGTTGAGAGAGCCGCGCAGCTTGACGTCGTTGTCACTAACAAGCTTGCTAGGTTGCGTAGCCAAGAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

81

Amino Acids

9.55

Weight (kDa)

9.61

Isoelectric Point (pI)

65.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32e	PF01655	1 - 70	1e-30	Ribosomal protein L32

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	37, 183
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	91, 190, 214
AluI	AGCT	3 cut(s)	91, 190, 214
Alw21I	GWGCWC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	199
BfaI	CTAG	3 cut(s)	92, 153, 219
BisI	GCNGC	2 cut(s)	183, 188
BlsI	GCNGC	2 cut(s)	184, 189
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	37, 183
BspFNI	CGCG	1 cut(s)	185
BssNI	GRCGYC	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	117
CviJI	RGCY	5 cut(s)	91, 182, 190, 214, 231
CviKI_1	RGCY	5 cut(s)	91, 182, 190, 214, 231
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	117
FaiI	YATR	1 cut(s)	18
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	183, 188
Fsp4HI	GCNGC	2 cut(s)	183, 188
FspBI	CTAG	3 cut(s)	92, 153, 219
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	183, 188
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	25, 102
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	76, 109, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	195
HspAI	GCGC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	92, 153, 219
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	38, 43, 169
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	153, 229
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	184, 189
PpuMI	RGGWCCY	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
SatI	GCNGC	2 cut(s)	183, 188
Sau96I	GGNCC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	6 cut(s)	93, 122, 192, 198, 216, 224
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	37, 183
SspMI	CTAG	3 cut(s)	92, 153, 219
TaiI	ACGT	1 cut(s)	198
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	117
XspI	CTAG	3 cut(s)	92, 153, 219
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.