Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Reverse (-)

3596277 .. 3598630

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGTGCCGCTGCTGAATAAGGCTATCGTGAAGAAGAGGGTCAAGCAGTTCAAAAGGCCCCAAAGCGACCGCAAGGTCTCCGTCAAGACCAATTGGAGGAGACCAAAGGGTATTGATTCTCGTGTAAGAAGAAAGTTCAAGGGATGCACTTTGATGCCCAACATTGGTTATGGCTCTGACAAGAAGACTCGCCATTATCTTCCGAATCATTTCAAGAAGTTTGTTGTGCACAACGCGAAGGAACTTGAGCTGTTGATGATGCACAACAGGACCTACTGCGCGGAGATTGCACACAATGTGTCGACGAGGAAGAGGAAAGAAATTGTTGAGAGAGCAGCCCAGCTTGATGTTGTTGTTACCAACAAGCTGGCCAGGCTACGCAGCCAGGAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

134

Amino Acids

15.65

Weight (kDa)

10.68

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	2 cut(s)	239, 284
AciI	CCGC	4 cut(s)	5, 11, 73, 284
AcoI	YGGCCR	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	301
AfiI	CCNNNNNNNGG	2 cut(s)	99, 167
AgsI	TTSAA	3 cut(s)	55, 142, 217
AjnI	CCWGG	2 cut(s)	374, 387
AluBI	AGCT	3 cut(s)	253, 346, 370
AluI	AGCT	3 cut(s)	253, 346, 370
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	85, 97
Alw44I	GTGCAC	1 cut(s)	230
AoxI	GGCC	2 cut(s)	59, 372
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	13, 338, 384
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	60, 273
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	350, 396
BciT130I	CCWGG	2 cut(s)	376, 389
BcoDI	GTCTC	2 cut(s)	85, 97
BisI	GCNGC	4 cut(s)	11, 14, 339, 385
BlsI	GCNGC	4 cut(s)	12, 15, 340, 386
Bme1390I	CCNGG	2 cut(s)	376, 389
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	60, 273
BmiI	GGNNCC	2 cut(s)	9, 62
BmrFI	CCNGG	2 cut(s)	376, 389
BmsI	GCATC	3 cut(s)	137, 147, 252
BpiI	GAAGAC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	85, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 167
BseBI	CCWGG	2 cut(s)	376, 389
BseGI	GGATG	2 cut(s)	152, 400
BseLI	CCNNNNNNNGG	2 cut(s)	99, 167
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	350, 396
BseYI	CCCAGC	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	239, 284
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	61, 374
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	99, 167
BsmAI	GTCTC	2 cut(s)	85, 97
BsnI	GGCC	2 cut(s)	61, 374
Bso31I	GGTCTC	2 cut(s)	85, 97
Bsp1286I	GDGCHC	1 cut(s)	234
BspACI	CCGC	4 cut(s)	5, 11, 73, 284
BspANI	GGCC	2 cut(s)	61, 374
BspFNI	CGCG	2 cut(s)	239, 284
BspLI	GGNNCC	2 cut(s)	9, 62
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	2 cut(s)	85, 97
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	376, 389
Bst6I	CTCTTC	2 cut(s)	32, 308
BstC8I	GCNNGC	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	152, 400
BstFNI	CGCG	2 cut(s)	239, 284
BstHHI	GCGC	1 cut(s)	284
BstMAI	GTCTC	2 cut(s)	85, 97
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 376
BstNI	CCWGG	2 cut(s)	376, 389
BstSCI	CCNGG	2 cut(s)	374, 387
BstSLI	GKGCMC	1 cut(s)	234
BstUI	CGCG	2 cut(s)	239, 284
BstV1I	GCAGC	2 cut(s)	350, 396
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	61, 374
BtsCI	GGATG	2 cut(s)	152, 400
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	60, 273
DraIII	CACNNNGTG	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	32, 308
EarI	CTCTTC	2 cut(s)	32, 308
Eco31I	GGTCTC	2 cut(s)	85, 97
Eco47I	GGWCC	1 cut(s)	273
EcoO109I	RGGNCCY	2 cut(s)	60, 273
EcoRII	CCWGG	2 cut(s)	374, 387
FaiI	YATR	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	4 cut(s)	11, 14, 339, 385
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	11, 14, 339, 385
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	4 cut(s)	11, 14, 339, 385
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	61, 374
HhaI	GCGC	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	3 cut(s)	119, 190, 208
Hpy166II	GTNNAC	2 cut(s)	232, 306
Hpy188I	TCNGA	2 cut(s)	181, 207
Hpy188III	TCNNGA	3 cut(s)	31, 88, 217
Hpy8I	GTNNAC	2 cut(s)	232, 306
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	150, 232, 265, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 376
HspAI	GCGC	1 cut(s)	282
LpnPI	CCDG	6 cut(s)	256, 356, 356, 361, 374, 388
Lsp1109I	GCAGC	2 cut(s)	350, 396
LweI	GCATC	3 cut(s)	137, 147, 252
MaeIII	GTNAC	1 cut(s)	358
MboII	GAAGA	6 cut(s)	46, 49, 144, 194, 199, 325
MfeI	CAATTG	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	234
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	94, 324
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	33, 93, 303, 309, 385
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	376, 389
MunI	CAATTG	1 cut(s)	94
MvaI	CCWGG	2 cut(s)	376, 389
MvnI	CGCG	2 cut(s)	239, 284
MwoI	GCNNNNNNNGC	2 cut(s)	290, 376
NlaIV	GGNNCC	2 cut(s)	9, 62
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	119, 208
PkrI	GCNGC	4 cut(s)	12, 15, 340, 386
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	374, 387
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	2 cut(s)	374, 387
PspN4I	GGNNCC	2 cut(s)	9, 62
PspPI	GGNCC	2 cut(s)	60, 273
PspPPI	RGGWCCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	155
SalI	GTCGAC	1 cut(s)	304
SatI	GCNGC	4 cut(s)	11, 14, 339, 385
Sau96I	GGNCC	2 cut(s)	60, 273
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	376, 389
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	5 cut(s)	81, 255, 278, 348, 372
SfaNI	GCATC	3 cut(s)	137, 147, 252
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	94, 324
SsiI	CCGC	4 cut(s)	5, 11, 73, 284
StyD4I	CCNGG	2 cut(s)	374, 387
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	94, 324
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	119, 208
TseI	GCWGC	3 cut(s)	13, 338, 384
TspGWI	ACGGA	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.