Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003166.1

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Forward (+)

56863 .. 58822

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003166.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaattctcttaataatcctgctttctgcctcttcctcctctccacagccttttcatcaggaacaatggccgtgcctttgctgaagaagcagattgtgaagaagcgcctcaagcagttcaagaggccccagagtgacaggaagatatgtgtcaagacaaactggagaaggcccaagggtattgattcacgtgtcaggcgtaagtttaagggagtcactctgatgcctaacattggttatggctctgataagaagactcgccactacctccccaacaaatttaagaaatttgttgtccacaacgtcaatgagttggaagttcttatgatgcacaacaggacttactgtgctgagattgcacacaacatttccacccggaagagaaaggagattgttgaacgtgcagctcagttggatgttgttgtcaccaacaaactcgccaggttgcgcagccaggaagacgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

155

Amino Acids

18.09

Weight (kDa)

10.59

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	3 cut(s)	4, 278, 287
AcuI	CTGAAG	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	121, 398
AjnI	CCWGG	2 cut(s)	440, 453
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AoxI	GGCC	3 cut(s)	69, 125, 170
ApeKI	GCWGC	2 cut(s)	404, 450
ApoI	RAATTY	3 cut(s)	4, 278, 287
AspLEI	GCGC	2 cut(s)	108, 450
AspS9I	GGNCC	2 cut(s)	126, 171
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	418
BbrPI	CACGTG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	416, 462
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	442, 455
BcnI	CCSGG	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	2 cut(s)	405, 451
BlsI	GCNGC	2 cut(s)	406, 452
Bme1390I	CCNGG	3 cut(s)	376, 442, 455
BmgT120I	GGNCC	2 cut(s)	126, 171
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	376, 442, 455
BmsI	GCATC	2 cut(s)	213, 318
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	442, 455
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	342, 422
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	416, 462
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	71, 127, 172
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	3 cut(s)	71, 127, 172
BspANI	GGCC	3 cut(s)	71, 127, 172
BspCNI	CTCAG	2 cut(s)	343, 421
BspLI	GGNNCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	442, 455
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	38, 374
BstBAI	YACGTR	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	351, 408
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 112, 356
BstNI	CCWGG	2 cut(s)	442, 455
BstSCI	CCNGG	3 cut(s)	374, 440, 453
BstV1I	GCAGC	2 cut(s)	416, 462
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	3 cut(s)	71, 127, 172
BtsCI	GGATG	1 cut(s)	421
CfoI	GCGC	2 cut(s)	108, 450
Cfr13I	GGNCC	2 cut(s)	126, 171
CviJI	RGCY	7 cut(s)	50, 71, 127, 172, 243, 407, 453
CviKI_1	RGCY	7 cut(s)	50, 71, 127, 172, 243, 407, 453
DdeI	CTNAG	2 cut(s)	351, 408
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	38, 374
EarI	CTCTTC	2 cut(s)	38, 374
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	440, 453
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaiI	YATR	3 cut(s)	148, 240, 326
Fnu4HI	GCNGC	2 cut(s)	405, 451
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	405, 451
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	2 cut(s)	107, 449
GluI	GCNGC	2 cut(s)	405, 451
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	3 cut(s)	71, 127, 172
HapII	CCGG	1 cut(s)	376
HhaI	GCGC	2 cut(s)	108, 450
Hin6I	GCGC	2 cut(s)	106, 448
HinP1I	GCGC	2 cut(s)	106, 448
HinfI	GANTC	3 cut(s)	185, 213, 256
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	222, 247
Hpy188III	TCNNGA	3 cut(s)	60, 121, 154
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	3 cut(s)	190, 303, 400
HpyCH4V	TGCA	3 cut(s)	331, 359, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 112, 356
HpyF3I	CTNAG	2 cut(s)	351, 408
HpySE526I	ACGT	3 cut(s)	190, 303, 400
HspAI	GCGC	2 cut(s)	106, 448
Lsp1109I	GCAGC	2 cut(s)	416, 462
LweI	GCATC	2 cut(s)	213, 318
MaeII	ACGT	3 cut(s)	190, 303, 400
MaeIII	GTNAC	3 cut(s)	134, 214, 424
MboII	GAAGA	6 cut(s)	25, 97, 112, 154, 265, 391
MluCI	AATT	3 cut(s)	4, 278, 287
MlyI	GAGTC	2 cut(s)	222, 250
MmeI	TCCRAC	2 cut(s)	294, 393
MnlI	CCTC	6 cut(s)	41, 47, 50, 117, 119, 278
MseI	TTAA	3 cut(s)	12, 207, 282
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	3 cut(s)	376, 442, 455
MvaI	CCWGG	2 cut(s)	442, 455
MwoI	GCNNNNNNNGC	3 cut(s)	88, 112, 356
NciI	CCSGG	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	3 cut(s)	134, 214, 424
NsbI	TGCGCA	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	406, 452
PleI	GAGTC	2 cut(s)	221, 250
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	2 cut(s)	221, 250
Ppu21I	YACGTR	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	440, 453
PspCI	CACGTG	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	440, 453
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	126, 171
RseI	CAYNNNNRTG	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	12, 207, 282
SatI	GCNGC	2 cut(s)	405, 451
Sau96I	GGNCC	2 cut(s)	126, 171
SchI	GAGTC	2 cut(s)	222, 250
ScrFI	CCNGG	3 cut(s)	376, 442, 455
SetI	ASST	6 cut(s)	193, 270, 306, 403, 409, 446
SfaNI	GCATC	2 cut(s)	213, 318
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	4, 278, 287
StyD4I	CCNGG	3 cut(s)	374, 440, 453
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	3 cut(s)	193, 306, 403
TasI	AATT	3 cut(s)	4, 278, 287
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	12, 207, 282
Tru9I	TTAA	3 cut(s)	12, 207, 282
TseFI	GTSAC	3 cut(s)	134, 214, 424
TseI	GCWGC	2 cut(s)	404, 450
Tsp45I	GTSAC	3 cut(s)	134, 214, 424
TspDTI	ATGAA	2 cut(s)	17, 45
XapI	RAATTY	3 cut(s)	4, 278, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.