Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Forward (+)

22090001 .. 22093354

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0153900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGTGATGCAATGCATGAGTACAGTGCGGTACTCCTTTTTGATCAGAGGGCGGCCACGAGGATATGTTTCCCCTAGCAGAGGATTAAGACAAGGTGATCCATTGTCACCTTATCTTTTTCTTCTGGGAGCAGAAGGATTCTCAGCTTTACTCCAGAAAAGTCTGGTTGCAGGTACTCTGCCAGGTATTGCAGTTTGTGCAAATGCACCCCCGGTAAATCACTTGTTGTTTGCGGATGATAGTATGCTCTATGCTCGGGCTTCGTTGGAAGCATGTAGTATCATTCAGGAAGTGTTGGAGACTTATGGGAGAGCTTCTGGTCAGGATGATATTTCTGGAGTATTGGGCGTGGAGGTGGTGGAGTCTCATGCCAAATATCTAGGTCTTCCCACTTATGTAGGGCGTAAGAAAACAGCTACATTTCAGTATATCAAGGAGAGACTGTCAAAAAAGCTTACTTCATGGCACGGTAAATTATTGAGTGGTGCAGGAAAAGATATTTTGATTAGGGTGGTGGCTCAGGCGTTACCTAATTATGCAATGAGTGTCTTTCAACTTACTAAGAGTTTTTGTGATGATCTGGAACAGCAGTGTGCACGATTTTGGTGGGGAAGCACGTTAGATAAAAGAAAAATCCACTGGAAGAATTGGAATGCTCTTTGTAATCCAAAGGAAGATGGTGGGTTAGGCTTTCGAAGCCTATCCAATTTCAACTCTGCTATGATAGCCAAACAAGCTTGGAGGATTGTGAATCACCCTTCATCGCTTGTTGCACGGATTTATAAAGCGAGATATTTTCCGGATACTTGTTTCTGGGAGGTAACTTCTCATGCTTCTCCCTCGTACTCGTGGAGAAGCATTTTCTCAACTCGAGATATGTTGAAAGATAGATGCTACTGGCAGGTGGGCAATGGAGAGAATATTGATATCTACTCAGATGGTTGGGTAGTGGCTTTACCGCTTGGGAGACCTATCCCTTCAGGATTGGCTATAGTTGAGGTTAGTAAAGTTCACGAGTTGTTTAGTGGCACTGGTGGATGGAACATTCCTTTGTTACAAGAAATTTTCACAGGGGAGGAAGCCACGGCAATTGCTGCAATTCCATTGAGTAGGAGAGTAGTCATTGATAGGTTTTGTTGGAAGCTTTCGAAGGATGGAAAGTTCTCGGTGAAGACGGCATATCGATCTGCGTTTATGAAGTCTGCCAGCTATTCTCCGTTGCAACTTCCTGTCGGCTCAGGTTTTTGGAAAAAGCTTTGGAAGGTGGTTATTCCCAATAAAGCAAAAATTCATGTTTGGAGAGCTTGTCTGGATATCCTTCCTTCGCTAGGTAGCTTGGCTTCGAAGCGAGTGGTTTTGGAGTCGAATTTTTGTGTTTTATGTGAGTCTCATACTGAAACGACGATCCACCTTTGTCAGGATTGCCCTTATACTAGGAGGGTGCTTCATACAAATGCTATGCTGCAACAGGTATGCTACAATCCGAATAATATGCTTGGTGATGTTATTAGTTGGTTGAGTCAGTGTGCGAATGAATTATCGCTCATACATTTTGGAGAACTTTTATTCTCGTTATGGGGAATTTGGAAGGAAAGAAATGATCGGGTTTGGAATCAAAAGAGGTGTGAGGCCAGGGATGTGAGTTTGGGGATTGTCTCTAGGCTGCAAGAATTCAGGGTTCACAATTTGAAACCCTACCAACCTAAGGTTAAACATGGAGCAGTGTGGAAAGCTCCTCCTGTGGGGGTGGTAAAGGTCAATGTTGATGGGGCATTCCATCACGCTTCCAGGAAGGGTGGTTTGGGTTTTGTTTTCAGAAATGAGAATGGAATAATGCTGGGTGGTGGCGCCTGGCCCTTGAGCGGGTTGAATTCCCCAGAACATGCTGAAATTTTGGCATGCAAGGTTGCTTTAGACTTTGGGGAGGTTCATGGTTTTGGACCCGTTCTTCTAGAGACTTTGGAGGTTCAACGTCAACTTTCTTTGCATGACTCTGTCAATTTATCAGGGCTAGGCAGAATATATGATGATGTTGTGGCTCTCTTGGAGGCTCAGAGTGTTATCCAGGTGACTCATGTAGGTAGGAAAGGCGGTACGAAGATTGTGTCCGGCGATGATGGATCCGAGACGGGTCTGGATCCATTGATCGTGAGTGGCTATGAGCTATCCGGCGCAGCTTTAGGTAAGGAGGACGGCGACTGTGGGGGCTTTGTCTTCAGCAGCAGAACCGTGGTAGATGGTGTTGCTGGTGAAGGCGGGGTTATTGGTAGTGGCAGCAGTCCGGTAGCGTTGGTGTGGCCTGTAGGTGTCGTTGGCAAGGGGACAGTGCTTGGCTTGGGGATTCGTCCTCAGGTTCTTGGGCTTGTCACTAAGCCTTGGACTTTTCTTTTGAATAGTTTAGTCTATCTTTTACTTGAACCCGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

809

Amino Acids

88.95

Weight (kDa)

8.89

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	388 - 481	2e-11	zinc-binding in reverse transcriptase
RVT_3	PF13456	587 - 696	1e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	783
AarI	CACCTGC	1 cut(s)	892
Acc36I	ACCTGC	2 cut(s)	161, 892
AccB1I	GGYRCC	1 cut(s)	1847
AccBSI	CCGCTC	1 cut(s)	1863
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	7 cut(s)	28, 52, 233, 959, 1863, 2091, 2256
AclWI	GGATC	6 cut(s)	92, 1399, 2115, 2128, 2132, 2145
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	7 cut(s)	1062, 1287, 1366, 1581, 1670, 1870, 1890
AcuI	CTGAAG	2 cut(s)	963, 2200
AcyI	GRCGYC	1 cut(s)	1848
AfaI	GTAC	5 cut(s)	22, 32, 175, 845, 2095
AfiI	CCNNNNNNNGG	7 cut(s)	80, 1328, 1417, 1705, 1742, 1862, 1863
AgsI	TTSAA	8 cut(s)	554, 712, 883, 1690, 1870, 1970, 2392, 2417
AjnI	CCWGG	5 cut(s)	181, 1631, 1787, 1850, 2064
AjuI	GAANNNNNNNTTGG	2 cut(s)	1784, 1816
AloI	GAACNNNNNNTCC	2 cut(s)	1145, 1177
Alw21I	GWGCWC	1 cut(s)	598
Alw26I	GTCTC	8 cut(s)	293, 369, 433, 961, 1392, 1660, 1949, 2120
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	6 cut(s)	92, 1399, 2115, 2128, 2132, 2145
Ama87I	CYCGRG	3 cut(s)	255, 870, 2420
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	4 cut(s)	53, 1629, 1853, 2297
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	6 cut(s)	1094, 1462, 1663, 2174, 2220, 2274
ApoI	RAATTY	7 cut(s)	1062, 1287, 1366, 1581, 1670, 1870, 1890
ArsI	GACNNNNNNTTYG	4 cut(s)	2090, 2122, 2371, 2403
AspLEI	GCGC	2 cut(s)	1850, 2174
AspS9I	GGNCC	2 cut(s)	1854, 1940
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	8 cut(s)	16, 99, 107, 746, 1180, 1511, 2080, 2261
AsuII	TTCGAA	3 cut(s)	694, 1148, 1343
AvaI	CYCGRG	3 cut(s)	255, 870, 2420
AvaII	GGWCC	1 cut(s)	1940
AxyI	CCTNAGG	2 cut(s)	1704, 2349
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	2 cut(s)	2120, 2137
BanI	GGYRCC	1 cut(s)	1847
BarI	GAAGNNNNNNTAC	2 cut(s)	1324, 1356
BauI	CACGAG	3 cut(s)	57, 847, 1013
BbsI	GAAGAC	3 cut(s)	377, 1178, 2206
Bbv12I	GWGCWC	1 cut(s)	598
BbvI	GCAGC	6 cut(s)	1081, 1449, 1650, 2186, 2232, 2286
BccI	CCATC	8 cut(s)	671, 932, 1032, 1148, 1760, 1785, 2111, 2231
BceAI	ACGGC	3 cut(s)	1101, 1191, 2209
BcgI	CGANNNNNNTGC	2 cut(s)	1474, 1508
BciT130I	CCWGG	5 cut(s)	183, 1633, 1789, 1852, 2066
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	8 cut(s)	293, 369, 433, 961, 1392, 1660, 1949, 2120
BfaI	CTAG	7 cut(s)	75, 380, 1328, 1434, 1659, 1952, 2012
BfmI	CTRYAG	2 cut(s)	990, 2301
BfoI	RGCGCY	1 cut(s)	1851
BfuAI	ACCTGC	2 cut(s)	161, 892
BfuI	GTATCC	1 cut(s)	796
BisI	GCNGC	7 cut(s)	53, 1095, 1463, 1664, 2175, 2221, 2275
BlsI	GCNGC	7 cut(s)	54, 1096, 1464, 1665, 2176, 2222, 2276
Bme1390I	CCNGG	6 cut(s)	183, 212, 1633, 1789, 1852, 2066
Bme18I	GGWCC	1 cut(s)	1940
BmeT110I	CYCGRG	3 cut(s)	255, 870, 2420
BmgT120I	GGNCC	2 cut(s)	1854, 1940
BmiI	GGNNCC	4 cut(s)	1849, 1942, 2122, 2139
BmrFI	CCNGG	6 cut(s)	183, 212, 1633, 1789, 1852, 2066
BmsI	GCATC	1 cut(s)	881
BpiI	GAAGAC	3 cut(s)	377, 1178, 2206
BpmI	CTGGAG	2 cut(s)	137, 357
Bpu10I	CCTNAGC	2 cut(s)	519, 1237
Bpu14I	TTCGAA	3 cut(s)	694, 1148, 1343
BpuEI	CTTGAG	1 cut(s)	1879
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	1183
BsaHI	GRCGYC	1 cut(s)	1848
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	6 cut(s)	210, 1083, 1632, 2229, 2375, 2421
BsaWI	WCCGGW	2 cut(s)	799, 2281
BsaXI	ACNNNNNCTCC	4 cut(s)	428, 458, 1291, 1321
Bsc4I	CCNNNNNNNGG	7 cut(s)	80, 1328, 1417, 1705, 1742, 1862, 1863
Bse1I	ACTGG	3 cut(s)	644, 902, 1036
Bse21I	CCTNAGG	2 cut(s)	1704, 2349
Bse3DI	GCAATG	3 cut(s)	17, 546, 916
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	5 cut(s)	183, 1633, 1789, 1852, 2066
BseCI	ATCGAT	1 cut(s)	1183
BseDI	CCNNGG	6 cut(s)	210, 1083, 1632, 2229, 2375, 2421
BseGI	GGATG	5 cut(s)	241, 331, 1043, 1159, 1642
BseLI	CCNNNNNNNGG	7 cut(s)	80, 1328, 1417, 1705, 1742, 1862, 1863
BseMI	GCAATG	3 cut(s)	17, 546, 916
BseMII	CTCAG	6 cut(s)	156, 533, 948, 1251, 2066, 2363
BseNI	ACTGG	3 cut(s)	644, 902, 1036
BseRI	GAGGAG	1 cut(s)	1725
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	6 cut(s)	1081, 1449, 1650, 2186, 2232, 2286
BseYI	CCCAGC	1 cut(s)	1837
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	55, 1631, 1855, 2299
BshNI	GGYRCC	1 cut(s)	1847
BshVI	ATCGAT	1 cut(s)	1183
BsiHKAI	GWGCWC	1 cut(s)	598
BsiHKCI	CYCGRG	3 cut(s)	255, 870, 2420
BsiSI	CCGG	5 cut(s)	212, 800, 2109, 2169, 2282
BslFI	GGGAC	1 cut(s)	2335
BslI	CCNNNNNNNGG	7 cut(s)	80, 1328, 1417, 1705, 1742, 1862, 1863
BsmAI	GTCTC	8 cut(s)	293, 369, 433, 961, 1392, 1660, 1949, 2120
BsmBI	CGTCTC	1 cut(s)	2120
BsmFI	GGGAC	1 cut(s)	2335
BsmI	GAATGC	2 cut(s)	658, 1772
BsnI	GGCC	4 cut(s)	55, 1631, 1855, 2299
Bso31I	GGTCTC	1 cut(s)	961
BsoBI	CYCGRG	3 cut(s)	255, 870, 2420
Bsp119I	TTCGAA	3 cut(s)	694, 1148, 1343
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp13I	TCCGGA	1 cut(s)	799
Bsp143I	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
BspACI	CCGC	7 cut(s)	28, 52, 233, 959, 1863, 2091, 2256
BspANI	GGCC	4 cut(s)	55, 1631, 1855, 2299
BspCNI	CTCAG	6 cut(s)	155, 532, 947, 1250, 2065, 2362
BspDI	ATCGAT	1 cut(s)	1183
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	4 cut(s)	1849, 1942, 2122, 2139
BspMI	ACCTGC	2 cut(s)	161, 892
BspPI	GGATC	6 cut(s)	92, 1399, 2115, 2128, 2132, 2145
BspT104I	TTCGAA	3 cut(s)	694, 1148, 1343
BspT107I	GGYRCC	1 cut(s)	1847
BspTNI	GGTCTC	1 cut(s)	961
BsrBI	CCGCTC	1 cut(s)	1863
BsrDI	GCAATG	3 cut(s)	17, 546, 916
BsrI	ACTGG	3 cut(s)	644, 902, 1036
BssECI	CCNNGG	6 cut(s)	210, 1083, 1632, 2229, 2375, 2421
BssMI	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
BssNI	GRCGYC	1 cut(s)	1848
BssSI	CACGAG	3 cut(s)	57, 847, 1013
BssT1I	CCWWGG	1 cut(s)	2375
Bst2BI	CACGAG	3 cut(s)	57, 847, 1013
Bst2UI	CCWGG	5 cut(s)	183, 1633, 1789, 1852, 2066
Bst4CI	ACNGT	6 cut(s)	25, 444, 470, 2201, 2230, 2326
BstACI	GRCGYC	1 cut(s)	1848
BstAPI	GCANNNNNTGC	2 cut(s)	197, 1094
BstBI	TTCGAA	3 cut(s)	694, 1148, 1343
BstC8I	GCNNGC	2 cut(s)	1207, 1900
BstDEI	CTNAG	9 cut(s)	142, 519, 561, 934, 1237, 1704, 2052, 2349, 2370
BstDSI	CCRYGG	2 cut(s)	1083, 2229
BstENI	CCTNNNNNAGG	3 cut(s)	78, 1326, 1415
BstF5I	GGATG	5 cut(s)	241, 331, 1043, 1159, 1642
BstH2I	RGCGCY	1 cut(s)	1851
BstHHI	GCGC	2 cut(s)	1850, 2174
BstKTI	GATC	9 cut(s)	45, 100, 580, 1187, 1407, 1603, 2123, 2140, 2148
BstMAI	GTCTC	8 cut(s)	293, 369, 433, 961, 1392, 1660, 1949, 2120
BstMBI	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 696, 725, 734, 1094
BstNI	CCWGG	5 cut(s)	183, 1633, 1789, 1852, 2066
BstNSI	RCATGY	3 cut(s)	276, 1886, 1902
BstSCI	CCNGG	6 cut(s)	181, 210, 1631, 1787, 1850, 2064
BstSFI	CTRYAG	2 cut(s)	990, 2301
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	6 cut(s)	1081, 1449, 1650, 2186, 2232, 2286
BstV2I	GAAGAC	3 cut(s)	377, 1178, 2206
BstX2I	RGATCY	2 cut(s)	2120, 2137
BstYI	RGATCY	2 cut(s)	2120, 2137
Bsu15I	ATCGAT	1 cut(s)	1183
Bsu36I	CCTNAGG	2 cut(s)	1704, 2349
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	4 cut(s)	55, 1631, 1855, 2299
BsuTUI	ATCGAT	1 cut(s)	1183
BtgI	CCRYGG	2 cut(s)	1083, 2229
BtgZI	GCGATG	2 cut(s)	747, 2127
BtsCI	GGATG	5 cut(s)	241, 331, 1043, 1159, 1642
BtsI	GCAGTG	2 cut(s)	596, 1728
BtsIMutI	CAGTG	7 cut(s)	30, 596, 637, 1029, 1529, 1728, 2331
BveI	ACCTGC	2 cut(s)	161, 892
Cac8I	GCNNGC	2 cut(s)	1207, 1900
CfoI	GCGC	2 cut(s)	1850, 2174
Cfr13I	GGNCC	2 cut(s)	1854, 1940
ClaI	ATCGAT	1 cut(s)	1183
Csp6I	GTAC	5 cut(s)	21, 31, 174, 844, 2094
CspCI	CAANNNNNGTGG	2 cut(s)	1072, 1107
CviQI	GTAC	5 cut(s)	21, 31, 174, 844, 2094
DdeI	CTNAG	9 cut(s)	142, 519, 561, 934, 1237, 1704, 2052, 2349, 2370
DinI	GGCGCC	1 cut(s)	1849
DpnI	GATC	9 cut(s)	44, 99, 579, 1186, 1406, 1602, 2122, 2139, 2147
DpnII	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
EaeI	YGGCCR	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	2375
Eco31I	GGTCTC	1 cut(s)	961
Eco32I	GATATC	2 cut(s)	928, 1315
Eco47I	GGWCC	1 cut(s)	1940
Eco57I	CTGAAG	2 cut(s)	963, 2200
Eco81I	CCTNAGG	2 cut(s)	1704, 2349
Eco88I	CYCGRG	3 cut(s)	255, 870, 2420
EcoNI	CCTNNNNNAGG	3 cut(s)	78, 1326, 1415
EcoRI	GAATTC	2 cut(s)	1670, 1870
EcoRII	CCWGG	5 cut(s)	181, 1631, 1787, 1850, 2064
EcoRV	GATATC	2 cut(s)	928, 1315
EcoT14I	CCWWGG	1 cut(s)	2375
EcoT22I	ATGCAT	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	1849
EheI	GGCGCC	1 cut(s)	1849
ErhI	CCWWGG	1 cut(s)	2375
Esp3I	CGTCTC	1 cut(s)	2120
FaqI	GGGAC	1 cut(s)	2335
FauI	CCCGC	2 cut(s)	1856, 2249
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	53, 1095, 1463, 1664, 2175, 2221, 2275
FokI	GGATG	5 cut(s)	248, 338, 1050, 1166, 1649
Fsp4HI	GCNGC	7 cut(s)	53, 1095, 1463, 1664, 2175, 2221, 2275
FspBI	CTAG	7 cut(s)	75, 380, 1328, 1434, 1659, 1952, 2012
GlaI	GCGC	2 cut(s)	1849, 2173
GluI	GCNGC	7 cut(s)	53, 1095, 1463, 1664, 2175, 2221, 2275
GsaI	CCCAGC	1 cut(s)	1841
GsuI	CTGGAG	2 cut(s)	137, 357
HaeII	RGCGCY	1 cut(s)	1851
HaeIII	GGCC	4 cut(s)	55, 1631, 1855, 2299
HapII	CCGG	5 cut(s)	212, 800, 2109, 2169, 2282
HhaI	GCGC	2 cut(s)	1850, 2174
Hin1I	GRCGYC	1 cut(s)	1848
Hin6I	GCGC	2 cut(s)	1848, 2172
HinP1I	GCGC	2 cut(s)	1848, 2172
HincII	GTYRAC	1 cut(s)	1976
HindII	GTYRAC	1 cut(s)	1976
HindIII	AAGCTT	4 cut(s)	452, 735, 1142, 1253
HpaII	CCGG	5 cut(s)	212, 800, 2109, 2169, 2282
HphI	GGTGA	8 cut(s)	16, 99, 107, 746, 1180, 1511, 2080, 2261
Hpy166II	GTNNAC	4 cut(s)	596, 1012, 1681, 1976
Hpy188I	TCNGA	6 cut(s)	47, 937, 1485, 1817, 2055, 2125
Hpy8I	GTNNAC	4 cut(s)	596, 1012, 1681, 1976
Hpy99I	CGWCG	1 cut(s)	1405
HpyCH4III	ACNGT	6 cut(s)	25, 444, 470, 2201, 2230, 2326
HpyCH4IV	ACGT	2 cut(s)	617, 1972
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 696, 725, 734, 1094
HpyF3I	CTNAG	9 cut(s)	142, 519, 561, 934, 1237, 1704, 2052, 2349, 2370
HpySE526I	ACGT	2 cut(s)	617, 1972
Hsp92I	GRCGYC	1 cut(s)	1848
HspAI	GCGC	2 cut(s)	1848, 2172
KasI	GGCGCC	1 cut(s)	1847
Kpn2I	TCCGGA	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
LmnI	GCTCC	3 cut(s)	128, 1718, 1738
Lsp1109I	GCAGC	6 cut(s)	1081, 1449, 1650, 2186, 2232, 2286
LweI	GCATC	1 cut(s)	881
MaeI	CTAG	7 cut(s)	75, 380, 1328, 1434, 1659, 1952, 2012
MaeII	ACGT	2 cut(s)	617, 1972
MaeIII	GTNAC	6 cut(s)	105, 525, 820, 1053, 2068, 2365
MalI	GATC	9 cut(s)	44, 99, 579, 1186, 1406, 1602, 2122, 2139, 2147
MbiI	CCGCTC	1 cut(s)	1863
MboI	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
MboII	GAAGA	8 cut(s)	113, 377, 655, 686, 1183, 1940, 2110, 2206
MfeI	CAATTG	1 cut(s)	1089
MflI	RGATCY	2 cut(s)	2120, 2137
MhlI	GDGCHC	1 cut(s)	598
Mly113I	GGCGCC	1 cut(s)	1848
MlyI	GAGTC	6 cut(s)	371, 1370, 1394, 1528, 1985, 2065
MmeI	TCCRAC	3 cut(s)	246, 276, 1118
Mph1103I	ATGCAT	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	799
MseI	TTAA	2 cut(s)	86, 1710
MslI	CAYNNNNRTG	1 cut(s)	1452
MspI	CCGG	5 cut(s)	212, 800, 2109, 2169, 2282
MspR9I	CCNGG	6 cut(s)	183, 212, 1633, 1789, 1852, 2066
MunI	CAATTG	1 cut(s)	1089
Mva1269I	GAATGC	2 cut(s)	658, 1772
MvaI	CCWGG	5 cut(s)	183, 1633, 1789, 1852, 2066
MwoI	GCNNNNNNNGC	5 cut(s)	197, 696, 725, 734, 1094
NarI	GGCGCC	1 cut(s)	1848
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
NlaIV	GGNNCC	4 cut(s)	1849, 1942, 2122, 2139
NmuCI	GTSAC	3 cut(s)	105, 2068, 2365
NsiI	ATGCAT	1 cut(s)	17
NspI	RCATGY	3 cut(s)	276, 1886, 1902
NspV	TTCGAA	3 cut(s)	694, 1148, 1343
PaeI	GCATGC	1 cut(s)	1902
PaeR7I	CTCGAG	1 cut(s)	870
PaqCI	CACCTGC	1 cut(s)	892
PctI	GAATGC	2 cut(s)	658, 1772
PfeI	GAWTC	4 cut(s)	138, 751, 1612, 2341
PflFI	GACNNNGTC	1 cut(s)	1994
PfoI	TCCNGGA	1 cut(s)	1787
PkrI	GCNGC	7 cut(s)	54, 1096, 1464, 1665, 2176, 2222, 2276
PleI	GAGTC	6 cut(s)	370, 1369, 1393, 1527, 1985, 2065
PluTI	GGCGCC	1 cut(s)	1851
PpsI	GAGTC	6 cut(s)	370, 1369, 1393, 1527, 1985, 2065
PsiI	TTATAA	1 cut(s)	783
Psp6I	CCWGG	5 cut(s)	181, 1631, 1787, 1850, 2064
PspFI	CCCAGC	1 cut(s)	1837
PspGI	CCWGG	5 cut(s)	181, 1631, 1787, 1850, 2064
PspN4I	GGNNCC	4 cut(s)	1849, 1942, 2122, 2139
PspPI	GGNCC	2 cut(s)	1854, 1940
PsuI	RGATCY	2 cut(s)	2120, 2137
PsyI	GACNNNGTC	1 cut(s)	1994
RsaI	GTAC	5 cut(s)	22, 32, 175, 845, 2095
RsaNI	GTAC	5 cut(s)	21, 31, 174, 844, 2094
RseI	CAYNNNNRTG	1 cut(s)	1452
SaqAI	TTAA	2 cut(s)	86, 1710
SatI	GCNGC	7 cut(s)	53, 1095, 1463, 1664, 2175, 2221, 2275
Sau3AI	GATC	9 cut(s)	42, 97, 577, 1184, 1404, 1600, 2120, 2137, 2145
Sau96I	GGNCC	2 cut(s)	1854, 1940
SchI	GAGTC	6 cut(s)	371, 1370, 1394, 1528, 1985, 2065
ScrFI	CCNGG	6 cut(s)	183, 212, 1633, 1789, 1852, 2066
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	881
SfcI	CTRYAG	2 cut(s)	990, 2301
SfoI	GGCGCC	1 cut(s)	1849
Sfr274I	CTCGAG	1 cut(s)	870
SfuI	TTCGAA	3 cut(s)	694, 1148, 1343
SinI	GGWCC	1 cut(s)	1940
SlaI	CTCGAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	1452
SmlI	CTYRAG	2 cut(s)	870, 1858
SmoI	CTYRAG	2 cut(s)	870, 1858
SphI	GCATGC	1 cut(s)	1902
SsiI	CCGC	7 cut(s)	28, 52, 233, 959, 1863, 2091, 2256
SspDI	GGCGCC	1 cut(s)	1847
SspI	AATATT	1 cut(s)	922
SspMI	CTAG	7 cut(s)	75, 380, 1328, 1434, 1659, 1952, 2012
StyD4I	CCNGG	6 cut(s)	181, 210, 1631, 1787, 1850, 2064
StyI	CCWWGG	1 cut(s)	2375
TaaI	ACNGT	6 cut(s)	25, 444, 470, 2201, 2230, 2326
TaiI	ACGT	2 cut(s)	620, 1975
TaqI	TCGA	6 cut(s)	694, 871, 1148, 1183, 1343, 1364
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	138, 751, 1612, 2341
Tru1I	TTAA	2 cut(s)	86, 1710
Tru9I	TTAA	2 cut(s)	86, 1710
TscAI	CASTG	7 cut(s)	30, 596, 644, 1036, 1529, 1728, 2331
TseFI	GTSAC	3 cut(s)	105, 2068, 2365
TseI	GCWGC	6 cut(s)	1094, 1462, 1663, 2174, 2220, 2274
Tsp45I	GTSAC	3 cut(s)	105, 2068, 2365
TspDTI	ATGAA	7 cut(s)	450, 750, 1211, 1280, 1436, 1548, 1919
TspGWI	ACGGA	2 cut(s)	790, 1206
TspRI	CASTG	7 cut(s)	30, 596, 644, 1036, 1529, 1728, 2331
Tth111I	GACNNNGTC	1 cut(s)	1994
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	1940
XagI	CCTNNNNNAGG	3 cut(s)	78, 1326, 1415
XapI	RAATTY	7 cut(s)	1062, 1287, 1366, 1581, 1670, 1870, 1890
XbaI	TCTAGA	1 cut(s)	1951
XceI	RCATGY	3 cut(s)	276, 1886, 1902
XhoI	CTCGAG	1 cut(s)	870
XspI	CTAG	7 cut(s)	75, 380, 1328, 1434, 1659, 1952, 2012
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.