MD10G1154100.v1.1

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003194
Physical Location & Seq
Forward (+)
24175771 .. 24177692
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1154100.v1.1.491

Sequence Viewer

Length: 402 bp
ATGGCCGTCCCTTTGCTGAAGAAGCAAATTGTGAAGAAGCGCAAGACGCACTTCAAGAGGCCCCAGAGTGACAGGAAGCACTGCGTCAAGGAAAGCTGGAGAAGGCCCAAGGGTATTGATTCACGTGTCAGGCGAAAGTTCAAGGGATGTGCATTGATGCCCAACATTGGCTATGGGTCAGACAAGAAGACTCGTCACTATCTGCCTAACAAGTTCAAGAAATTTGTCGTGCACAATGTCAAAGAGGTTGAACTTCTAATGATGCACAACAGGACTTACTGTGCTGAGATTGCGCACAACGTTTCCACCAGGAAGAGGAAGGAGATCGTCGAGCGTGCAGCCCAGTTGGATGTTGTTGTTACCAACAAACTTGCCAGGTTGCGCAGCCAGGAGGACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0001889 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009410 GO:0009719 GO:0009725 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0014070 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030867 GO:0031090 GO:0031099 GO:0031100 GO:0031960 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033365 GO:0033993 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0035690 GO:0042175 GO:0042221 GO:0042493 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048545 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051384 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061008 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070972 GO:0071310 GO:0071383 GO:0071384 GO:0071385 GO:0071396 GO:0071407 GO:0071466 GO:0071495 GO:0071548 GO:0071549 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097327 GO:0097421 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko03022 ko04080 ko04141 ko04725 map03010 map03022 map04080 map04141 map04725
Pfam Domains
Protein Families
Ribosomal_L32e

Protein Analysis

134

Amino Acids

15.76

Weight (kDa)

10.51

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32e PF01655 15 - 122 1.3e-47 Ribosomal protein L32
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 294, 383
AclI AACGTT 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 38
AcvI CACGTG 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 167, 315
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 4 cut(s) 55, 142, 217, 251
AjnI CCWGG 3 cut(s) 308, 374, 387
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
AoxI GGCC 3 cut(s) 3, 59, 104
ApaLI GTGCAC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 338, 384
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 3 cut(s) 42, 295, 384
AspS9I GGNCC 2 cut(s) 60, 105
BaeGI GKGCMC 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 350, 396
BciT130I CCWGG 3 cut(s) 310, 376, 389
BisI GCNGC 2 cut(s) 339, 385
BlsI GCNGC 2 cut(s) 340, 386
Bme1390I CCNGG 3 cut(s) 310, 376, 389
BmgT120I GGNCC 2 cut(s) 60, 105
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 3 cut(s) 310, 376, 389
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 147, 252
BmuI ACTGGG 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 315
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 3 cut(s) 310, 376, 389
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 152, 355
BseLI CCNNNNNNNGG 2 cut(s) 167, 315
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 2 cut(s) 350, 396
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 5, 61, 106
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 167, 315
BsnI GGCC 3 cut(s) 5, 61, 106
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 324
BspANI GGCC 3 cut(s) 5, 61, 106
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 3 cut(s) 310, 376, 389
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 2 cut(s) 152, 355
BstHHI GCGC 3 cut(s) 42, 295, 384
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 3 cut(s) 22, 46, 290
BstNI CCWGG 3 cut(s) 310, 376, 389
BstSCI CCNGG 3 cut(s) 308, 374, 387
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 350, 396
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 3 cut(s) 5, 61, 106
BtsCI GGATG 2 cut(s) 152, 355
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 3 cut(s) 42, 295, 384
Cfr13I GGNCC 2 cut(s) 60, 105
CseI GACGC 2 cut(s) 55, 73
CviJI RGCY 7 cut(s) 5, 61, 96, 106, 171, 341, 387
CviKI_1 RGCY 7 cut(s) 5, 61, 96, 106, 171, 341, 387
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 308, 374, 387
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaiI YATR 1 cut(s) 174
FalI AAGNNNNNCTT 2 cut(s) 35, 67
Fnu4HI GCNGC 2 cut(s) 339, 385
FokI GGATG 2 cut(s) 159, 362
Fsp4HI GCNGC 2 cut(s) 339, 385
FspI TGCGCA 2 cut(s) 294, 383
GlaI GCGC 3 cut(s) 41, 294, 383
GluI GCNGC 2 cut(s) 339, 385
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 3 cut(s) 5, 61, 106
HgaI GACGC 2 cut(s) 55, 73
HhaI GCGC 3 cut(s) 42, 295, 384
Hin6I GCGC 3 cut(s) 40, 293, 382
HinP1I GCGC 3 cut(s) 40, 293, 382
HinfI GANTC 2 cut(s) 119, 190
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 55, 217
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 96, 313
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 124, 300
HpyCH4V TGCA 4 cut(s) 152, 232, 265, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 46, 290
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 124, 300
HspAI GCGC 3 cut(s) 40, 293, 382
Kzo9I GATC 1 cut(s) 324
Lsp1109I GCAGC 2 cut(s) 350, 396
LweI GCATC 2 cut(s) 147, 252
MaeII ACGT 2 cut(s) 124, 300
MaeIII GTNAC 3 cut(s) 68, 194, 358
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 4 cut(s) 31, 46, 199, 325
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 27, 221
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 51, 238, 309, 385
MspR9I CCNGG 3 cut(s) 310, 376, 389
MvaI CCWGG 3 cut(s) 310, 376, 389
MwoI GCNNNNNNNGC 3 cut(s) 22, 46, 290
NdeII GATC 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 68, 194
NsbI TGCGCA 2 cut(s) 294, 383
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 340, 386
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 125
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 308, 374, 387
PspCI CACGTG 1 cut(s) 125
PspGI CCWGG 3 cut(s) 308, 374, 387
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 105
SatI GCNGC 2 cut(s) 339, 385
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 60, 105
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 3 cut(s) 310, 376, 389
SduI GDGCHC 1 cut(s) 234
SetI ASST 5 cut(s) 98, 127, 249, 303, 380
SfaNI GCATC 2 cut(s) 147, 252
Sse9I AATT 2 cut(s) 27, 221
StyD4I CCNGG 3 cut(s) 308, 374, 387
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 2 cut(s) 127, 303
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 27, 221
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 2 cut(s) 68, 194
TseI GCWGC 2 cut(s) 338, 384
Tsp45I GTSAC 2 cut(s) 68, 194
TspRI CASTG 1 cut(s) 86
VneI GTGCAC 1 cut(s) 230
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.