Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Forward (+)

18833240 .. 18834632

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGTTCCGTTGCTTACGAAGAAGGTGGTGAAGAAGAGGTCTGCCAAATTCATCAGACCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGACTCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATGTTGGTTACGGATCTGATAAGAAGACCCGCCACTACCTCCCAAATGGATTCAAGAAGTTCATTGTTCACAACACCTCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAATATCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACGTTGTTGTTTCCAACAAGCTTGGTAGGTTGCGTAGCCAGGAAGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

133

Amino Acids

15.47

Weight (kDa)

10.78

Isoelectric Point (pI)

69.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32e	PF01655	16 - 122	3.1e-47	Ribosomal protein L32

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 193
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	142, 217
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	6 cut(s)	96, 247, 253, 338, 346, 370
AluI	AGCT	6 cut(s)	96, 247, 253, 338, 346, 370
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	2 cut(s)	123, 248
AoxI	GGCC	2 cut(s)	104, 321
ApoI	RAATTY	1 cut(s)	50
AsuC2I	CCSGG	2 cut(s)	124, 125
AsuHPI	GGTGA	4 cut(s)	43, 73, 139, 142
AvaI	CYCGRG	2 cut(s)	123, 248
AxyI	CCTNAGG	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	389
BcnI	CCSGG	2 cut(s)	124, 125
BfaI	CTAG	1 cut(s)	347
Bme1390I	CCNGG	3 cut(s)	124, 125, 389
BmeT110I	CYCGRG	2 cut(s)	123, 248
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	124, 125, 389
BmsI	GCATC	2 cut(s)	147, 252
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	118
BpuMI	CCSGG	2 cut(s)	124, 125
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	234, 356
BseRI	GAGGAG	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	106, 323
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	2 cut(s)	123, 248
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	2 cut(s)	106, 323
BsoBI	CYCGRG	2 cut(s)	123, 248
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	70, 176
BspACI	CCGC	2 cut(s)	5, 193
BspANI	GGCC	2 cut(s)	106, 323
BspCNI	CTCAG	2 cut(s)	235, 355
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	70, 176
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	85, 281
Bst6I	CTCTTC	2 cut(s)	32, 308
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	108, 243, 342
BstKTI	GATC	2 cut(s)	73, 179
BstMBI	GATC	2 cut(s)	70, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	122, 123, 387
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	106, 323
CciI	TCATGA	1 cut(s)	258
Cfr9I	CCCGGG	1 cut(s)	123
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	9 cut(s)	96, 106, 247, 253, 323, 338, 346, 370, 387
CviKI_1	RGCY	9 cut(s)	96, 106, 247, 253, 323, 338, 346, 370, 387
DdeI	CTNAG	3 cut(s)	108, 243, 342
DpnI	GATC	2 cut(s)	72, 178
DpnII	GATC	2 cut(s)	70, 176
Eam1104I	CTCTTC	2 cut(s)	32, 308
EarI	CTCTTC	2 cut(s)	32, 308
Ecl136II	GAGCTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	123, 248
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	260, 326
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	106, 323
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	78, 119, 213
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	4 cut(s)	43, 73, 139, 142
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	59, 181, 244
Hpy188III	TCNNGA	2 cut(s)	217, 259
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	85, 281
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	265, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	108, 243, 342
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	70, 176
LpnPI	CCDG	5 cut(s)	77, 82, 137, 256, 374
LweI	GCATC	2 cut(s)	147, 252
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	148, 170
MalI	GATC	2 cut(s)	72, 178
MboI	GATC	2 cut(s)	70, 176
MboII	GAAGA	6 cut(s)	34, 46, 49, 144, 199, 325
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	5 cut(s)	33, 93, 96, 212, 250
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	124, 125, 389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	2 cut(s)	124, 125
NdeII	GATC	2 cut(s)	70, 176
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	78, 213
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	9
PspXI	VCTCGAGB	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	70, 176
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	124, 125, 389
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	147, 252
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmaI	CCCGGG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	5, 193
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	3 cut(s)	122, 123, 387
TaaI	ACNGT	2 cut(s)	85, 281
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	78, 213
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	43, 214
TspGWI	ACGGA	1 cut(s)	189
TspMI	CCCGGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	123
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.