Prupe.8G192900_v2.0.a1

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003194
Physical Location & Seq
Forward (+)
18659275 .. 18661424
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G192900.1

Sequence Viewer

Length: 402 bp
ATGGCTGTCCCTTTGCTGAAGAAGCAAATTGTGAAGAAGCGTACCAAGCACTTCAAGAGGCCCCAAAGTGACAGGAAGATATGCGTCAAGGAAAGCTGGAGAAGGCCCAAGGGTATTGATTCACGTGTCAGGCGAAAGTTTAAGGGATGTGCCTTGATGCCCAACATTGGCTATGGTTCAGACAAGAAGACTCGCCACTTTCTCCCTAATAAGTTCAAGAAATTCGTTGTGCACAATGTCAAAGAGGTTGAAATCCTAATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACAATATTTCCACCAAGAAGAGAAAGGAGATCGTCGAGCGTGCAGCGCAGTTGGATGTTGTTGTTACCAACAAACTTGCCAGGCTGCGCAGCCAGGAGGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0001889 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009410 GO:0009719 GO:0009725 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0014070 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022625 GO:0022626 GO:0030867 GO:0031090 GO:0031099 GO:0031100 GO:0031960 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033365 GO:0033993 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0035690 GO:0042175 GO:0042221 GO:0042493 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048545 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0051384 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061008 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070972 GO:0071310 GO:0071383 GO:0071384 GO:0071385 GO:0071396 GO:0071407 GO:0071466 GO:0071495 GO:0071548 GO:0071549 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097327 GO:0097421 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko03022 ko04080 ko04141 ko04725 map03010 map03022 map04080 map04141 map04725
Pfam Domains
Protein Families
Ribosomal_L32e

Protein Analysis

134

Amino Acids

15.71

Weight (kDa)

10.52

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 383
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 38
AcvI CACGTG 1 cut(s) 125
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 55, 217, 251
AjnI CCWGG 2 cut(s) 374, 387
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
AoxI GGCC 2 cut(s) 59, 104
ApaLI GTGCAC 1 cut(s) 230
ApeKI GCWGC 3 cut(s) 338, 379, 384
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 2 cut(s) 343, 384
AspS9I GGNCC 2 cut(s) 60, 105
BaeGI GKGCMC 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 350, 366, 396
BciT130I CCWGG 2 cut(s) 376, 389
BisI GCNGC 3 cut(s) 339, 380, 385
BlsI GCNGC 3 cut(s) 340, 381, 386
Bme1390I CCNGG 2 cut(s) 376, 389
BmgT120I GGNCC 2 cut(s) 60, 105
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 2 cut(s) 376, 389
BmsI GCATC 2 cut(s) 147, 252
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 118
BsaAI YACGTR 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 376, 389
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 152, 355, 400
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 3 cut(s) 350, 366, 396
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 2 cut(s) 61, 106
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 167
BsnI GGCC 2 cut(s) 61, 106
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 324
BspANI GGCC 2 cut(s) 61, 106
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 376, 389
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 152, 355, 400
BstHHI GCGC 2 cut(s) 343, 384
BstKTI GATC 1 cut(s) 327
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 4 cut(s) 22, 46, 290, 340
BstNI CCWGG 2 cut(s) 376, 389
BstSCI CCNGG 2 cut(s) 374, 387
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 3 cut(s) 350, 366, 396
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 61, 106
BtsCI GGATG 3 cut(s) 152, 355, 400
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 2 cut(s) 343, 384
Cfr13I GGNCC 2 cut(s) 60, 105
CseI GACGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 7 cut(s) 5, 61, 96, 106, 171, 379, 387
CviKI_1 RGCY 7 cut(s) 5, 61, 96, 106, 171, 379, 387
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 374, 387
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaiI YATR 2 cut(s) 82, 174
Fnu4HI GCNGC 3 cut(s) 339, 380, 385
FokI GGATG 2 cut(s) 159, 362
Fsp4HI GCNGC 3 cut(s) 339, 380, 385
FspI TGCGCA 1 cut(s) 383
GlaI GCGC 2 cut(s) 342, 383
GluI GCNGC 3 cut(s) 339, 380, 385
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 2 cut(s) 61, 106
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 343, 384
Hin6I GCGC 2 cut(s) 341, 382
HinP1I GCGC 2 cut(s) 341, 382
HinfI GANTC 2 cut(s) 119, 190
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 55, 217
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 232, 265, 293, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 46, 290, 340
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 124
HspAI GCGC 2 cut(s) 341, 382
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 7 cut(s) 58, 82, 115, 256, 361, 374, 388
Lsp1109I GCAGC 3 cut(s) 350, 366, 396
LweI GCATC 2 cut(s) 147, 252
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 68, 358
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 5 cut(s) 31, 46, 88, 199, 325
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 27, 221
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 51, 238, 385
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 376, 389
MvaI CCWGG 2 cut(s) 376, 389
MwoI GCNNNNNNNGC 4 cut(s) 22, 46, 290, 340
NdeII GATC 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 68
NsbI TGCGCA 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 3 cut(s) 340, 381, 386
PleI GAGTC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 374, 387
PspCI CACGTG 1 cut(s) 125
PspGI CCWGG 2 cut(s) 374, 387
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 105
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 339, 380, 385
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 2 cut(s) 60, 105
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 376, 389
SduI GDGCHC 1 cut(s) 234
SetI ASST 3 cut(s) 98, 127, 249
SfaNI GCATC 2 cut(s) 147, 252
Sse9I AATT 2 cut(s) 27, 221
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 374, 387
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 27, 221
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 338, 379, 384
Tsp45I GTSAC 1 cut(s) 68
VneI GTGCAC 1 cut(s) 230
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.