Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Forward (+)

11823653 .. 11823922

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20041.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCTAACATTGGTTATGGTTCTGACAAGAAGACTCGCCATTATCTTCCCAGTCATTTCAAGAAGTTTGTTGTCCATGATGTCAAGGAGCTGGAAGTTCTGATGATGCACAATAGGACCTATTGTGCTGAGACTGCACACAACATCTCCACAAGGAAGATGAAGGAAATTGTTGAGAGAGCTGCCCCGTTTGATATTGTTGTCACTAACAAGCTTGCTAGGTTGCGTAGCCAAGAGGATGAACGAGCTTATTTTAGACATGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

90

Amino Acids

10.54

Weight (kDa)

9.56

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32e	PF01655	1 - 70	1.3e-26	Ribosomal protein L32

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	4 cut(s)	91, 182, 214, 248
AluI	AGCT	4 cut(s)	91, 182, 214, 248
Alw26I	GTCTC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	2 cut(s)	77, 260
CviJI	RGCY	5 cut(s)	91, 182, 214, 231, 248
CviKI_1	RGCY	5 cut(s)	91, 182, 214, 231, 248
DdeI	CTNAG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	117
FaeI	CATG	2 cut(s)	80, 263
FaiI	YATR	3 cut(s)	18, 78, 261
FatI	CATG	2 cut(s)	76, 259
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	80, 263
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	25, 102
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	109, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	80, 263
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	2 cut(s)	64, 77
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	38, 43, 169
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	80, 263
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	263
PciI	ACATGT	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	117
PscI	ACATGT	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	117
PspPPI	RGGWCCY	1 cut(s)	117
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	28
SetI	ASST	6 cut(s)	93, 122, 184, 216, 224, 250
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	219
TasI	AATT	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	176, 255
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.