Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010496.1

Orthogroup ID

OG0003194

Physical Location & Seq

Genomic Coordinates Reverse (-)

25358 .. 26812

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010496.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggcggttccgttgttgaagaaggcgatcgtgaagaagagggtcaagcaatttaagaggccccaaagcgaccgcaagatctgcgtcaagaccaactggaggaggcctaagggtattgactctcgggtacgaagaaagttcaagggagttactctcatgcccaacattggttatggttctgacaagaagactcgccattatcttcccaatcatttcaagaagtttgttgtgcacaatgtcaaggagctagaagttctgatgatgcacaataggacctattgtgctgagattgcacacaatatctccacaaggaagaggaaggaaattgttgagagagccgctcagcttgacgttgttgtcactaacaagcttgctaggttgcgtagccaagaggatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32e

Protein Analysis

133

Amino Acids

15.72

Weight (kDa)

10.7

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18100 AT5G46430 AT5G46430
fragaria_vesca	FvH4_2g18030 FvH4_3g06420 FvH4_3g06420 FvH4_5g20041 FvH4_6g42210
malus_domestica	MD05G1164800.v1.1 MD05G1291900.v1.1 MD10G1154100.v1.1 MD10G1267800.v1.1
prunus_persica	Prupe.4G073600_v2.0.a1 Prupe.8G192900_v2.0.a1
pyrus_communis	pycom10g13320
rosa_chinensis	RchiOBHm_Chr5g0012891 RchiOBHm_Chr6g0283421
rosa_laevigata	RLG00000012828 RLG00000031966
rosa_multiflora	Rmu_sc0003166.1_g000014 Rmu_sc0010496.1_g000007 Rmu_sc0012675.1_g000002
rosa_roxburghii	Rroxscaffold_1G00063690 Rroxscaffold_6G00403700 Rroxscaffold_7G00185550
rosa_rugosa	Rorug05G0005000 Rorug06G0153900
rosa_samantha	Rh5AG099200 Rh5BG095800 Rh5CG108100 Rh5DG094500 Rh6BG268800 Rh6CG268600 Rh6DG262100 Rh7BG019600
rosa_wichuraiana	Rw5G008660 Rw6G023050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	3 cut(s)	5, 73, 339
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	99, 167
AgsI	TTSAA	3 cut(s)	19, 142, 217
AluBI	AGCT	3 cut(s)	247, 346, 370
AluI	AGCT	3 cut(s)	247, 346, 370
Alw21I	GWGCWC	1 cut(s)	234
Alw44I	GTGCAC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	2 cut(s)	59, 104
ApaLI	GTGCAC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	60, 273
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	273
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	248, 375
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	60, 273
BmiI	GGNNCC	2 cut(s)	9, 62
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 325, 357
BpmI	CTGGAG	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 167
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	99, 167
BseMII	CTCAG	2 cut(s)	276, 356
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	234
Bsh1285I	CGRYCG	2 cut(s)	30, 73
BshFI	GGCC	2 cut(s)	61, 106
BsiEI	CGRYCG	2 cut(s)	30, 73
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	99, 167
BsnI	GGCC	2 cut(s)	61, 106
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	27, 78
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	5, 73, 339
BspANI	GGCC	2 cut(s)	61, 106
BspCNI	CTCAG	2 cut(s)	277, 355
BspLI	GGNNCC	2 cut(s)	9, 62
BsrBI	CCGCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	27, 78
Bst6I	CTCTTC	2 cut(s)	32, 308
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	108, 285, 342
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	2 cut(s)	30, 81
BstMBI	GATC	2 cut(s)	27, 78
BstMCI	CGRYCG	2 cut(s)	30, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 290
BstSLI	GKGCMC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	61, 106
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	60, 273
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	7 cut(s)	61, 106, 247, 338, 346, 370, 387
CviKI_1	RGCY	7 cut(s)	61, 106, 247, 338, 346, 370, 387
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	3 cut(s)	108, 285, 342
DpnI	GATC	2 cut(s)	29, 80
DpnII	GATC	2 cut(s)	27, 78
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	32, 308
EarI	CTCTTC	2 cut(s)	32, 308
Eco147I	AGGCCT	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	123
EcoO109I	RGGNCCY	2 cut(s)	60, 273
FaeI	CATG	1 cut(s)	160
FaiI	YATR	2 cut(s)	158, 174
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	248, 375
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	61, 106
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	119, 190
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	181, 258
Hpy188III	TCNNGA	3 cut(s)	31, 88, 217
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	16, 313
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	232, 265, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 290
HpyF3I	CTNAG	3 cut(s)	108, 285, 342
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	27, 78
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	82
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	248, 375
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	148, 358
MalI	GATC	2 cut(s)	29, 80
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	27, 78
MboII	GAAGA	7 cut(s)	31, 46, 49, 144, 194, 199, 325
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	2 cut(s)	50, 324
MlyI	GAGTC	2 cut(s)	113, 184
MnlI	CCTC	6 cut(s)	33, 51, 93, 96, 309, 385
MseI	TTAA	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	81, 290
NdeII	GATC	2 cut(s)	27, 78
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	9, 62
NmuCI	GTSAC	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	2 cut(s)	113, 184
PpsI	GAGTC	2 cut(s)	113, 184
PpuMI	RGGWCCY	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	9, 62
PspPI	GGNCC	2 cut(s)	60, 273
PspPPI	RGGWCCY	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	78
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	27, 78
Sau96I	GGNCC	2 cut(s)	60, 273
SchI	GAGTC	2 cut(s)	113, 184
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	6 cut(s)	249, 278, 348, 354, 372, 380
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	50, 324
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	5, 73, 339
SspMI	CTAG	2 cut(s)	248, 375
StuI	AGGCCT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	354
TasI	AATT	2 cut(s)	50, 324
TauI	GCSGC	1 cut(s)	341
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	273
XspI	CTAG	2 cut(s)	248, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.