AT4G22550

lipid phosphate phosphatase beta isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005864
Physical Location & Seq
Reverse (-)
11877949 .. 11879021
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22550.1

Sequence Viewer

Length: 642 bp
ATGTCTCCGTCGACGACGACGATTTTCATCGGTCCCATCTTAGCGGTGGACGCCGCCGTATCTCACGCGATTCACACGGCGGCGAAACCATTCCTCCCACCATTTGTCCTCCTCCTCCTCGAAATCTCAGCTGATTTCCGATTCTCCTTCCCCGTATCCCTTTCCTTCCTCCTCTCCCCTCCATTACGCTCTTTCCTCGTCCCTTTCCTCCTCGGCCTCCTCTTCGATCTAATCTTCGTCGGAATCGTAAAATTAATCTTCCGTCGTGCTCGTCCCGCTTACAATCACCCTTCAATGTCCGCCGCTGTATCAGCTGATCACTACTCGTTCCCCTCAGGTCACGCTTCTCGCGTTTTCTTCGTTGCTGCATCTGTTCACTTCTTCTCTGCTGCTGCTGAAGCTTCCATGACTGGTCCAAGCTACTCCTTCTTAGATGGATGGATCAGAGATCATAACGATGGCGATGTGAAGGTAGAAGTTGTGGTCGTTGTATGGATCTGGGCAACAGTGACTGCAATTTCAAGGATTCTTTTAGGAAGACATTACGTTCTCGATGTAGCTGCTGGTGCTTTTTTAGGGATTGTAGAAGCTCTCTTTGCTCTTCGATTTCTGAGATTTGATGAAATGATCTTTGGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

213

Amino Acids

23.39

Weight (kDa)

7.11

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 66 - 204 3.4e-20 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 11
AccII CGCG 2 cut(s) 68, 351
AciI CCGC 6 cut(s) 44, 54, 80, 276, 300, 303
AclWI GGATC 2 cut(s) 449, 503
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 51
AgsI TTSAA 2 cut(s) 294, 522
AjuI GAANNNNNNNTTGG 1 cut(s) 615
AluBI AGCT 6 cut(s) 131, 314, 401, 420, 560, 590
AluI AGCT 6 cut(s) 131, 314, 401, 420, 560, 590
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 449, 503
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 4 cut(s) 365, 389, 392, 560
AseI ATTAAT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 32, 413
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 2 cut(s) 32, 413
AxyI CCTNAGG 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 4 cut(s) 352, 376, 379, 547
BccI CCATC 4 cut(s) 44, 428, 432, 452
BceAI ACGGC 2 cut(s) 41, 93
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 7 cut(s) 54, 81, 303, 366, 390, 393, 561
BlsI GCNGC 7 cut(s) 55, 82, 304, 367, 391, 394, 562
Bme18I GGWCC 2 cut(s) 32, 413
BmgT120I GGNCC 2 cut(s) 32, 413
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 26
BseMII CTCAG 3 cut(s) 141, 348, 602
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 6 cut(s) 101, 104, 107, 161, 200, 209
BseXI GCAGC 4 cut(s) 352, 376, 379, 547
Bsh1236I CGCG 2 cut(s) 68, 351
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 271
BslFI GGGAC 3 cut(s) 18, 185, 258
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 18, 185, 258
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 6 cut(s) 226, 316, 441, 448, 495, 627
BspACI CCGC 6 cut(s) 44, 54, 80, 276, 300, 303
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 3 cut(s) 140, 347, 603
BspFNI CGCG 2 cut(s) 68, 351
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 449, 503
BspQI GCTCTTC 1 cut(s) 606
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 6 cut(s) 226, 316, 441, 448, 495, 627
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 508
Bst6I CTCTTC 2 cut(s) 227, 606
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 5 cut(s) 40, 127, 334, 430, 611
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 2 cut(s) 68, 351
BstKTI GATC 6 cut(s) 229, 319, 444, 451, 498, 630
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 226, 316, 441, 448, 495, 627
BstMWI GCNNNNNNNGC 6 cut(s) 50, 275, 311, 398, 566, 596
BstUI CGCG 2 cut(s) 68, 351
BstV1I GCAGC 4 cut(s) 352, 376, 379, 547
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 334
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 443
BtsIMutI CAGTG 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 32, 413
CseI GACGC 1 cut(s) 59
CviAII CATG 1 cut(s) 406
CviJI RGCY 7 cut(s) 131, 216, 314, 401, 420, 560, 590
CviKI_1 RGCY 7 cut(s) 131, 216, 314, 401, 420, 560, 590
DdeI CTNAG 5 cut(s) 40, 127, 334, 430, 611
DpnI GATC 6 cut(s) 228, 318, 443, 450, 497, 629
DpnII GATC 6 cut(s) 226, 316, 441, 448, 495, 627
Eam1104I CTCTTC 2 cut(s) 227, 606
EarI CTCTTC 2 cut(s) 227, 606
EciI GGCGGA 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 32, 413
Eco57I CTGAAG 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 334
FaeI CATG 1 cut(s) 409
FaiI YATR 3 cut(s) 407, 453, 493
FaqI GGGAC 3 cut(s) 18, 185, 258
FatI CATG 1 cut(s) 405
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 7 cut(s) 54, 81, 303, 366, 390, 393, 561
FokI GGATG 1 cut(s) 450
Fsp4HI GCNGC 7 cut(s) 54, 81, 303, 366, 390, 393, 561
GluI GCNGC 7 cut(s) 54, 81, 303, 366, 390, 393, 561
HaeIII GGCC 1 cut(s) 216
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 409
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 70, 141, 243, 526
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 3 cut(s) 12, 49, 376
Hpy188I TCNGA 4 cut(s) 140, 242, 446, 612
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 3 cut(s) 12, 49, 376
Hpy99I CGWCG 6 cut(s) 13, 16, 19, 22, 242, 267
HpyAV CCTTC 5 cut(s) 157, 175, 300, 436, 463
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 368, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 275, 311, 398, 566, 596
HpyF3I CTNAG 5 cut(s) 40, 127, 334, 430, 611
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 6 cut(s) 226, 316, 441, 448, 495, 627
LguI GCTCTTC 1 cut(s) 606
LpnPI CCDG 4 cut(s) 321, 396, 484, 549
Lsp1109I GCAGC 4 cut(s) 352, 376, 379, 547
LweI GCATC 1 cut(s) 377
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 338, 508
MalI GATC 6 cut(s) 228, 318, 443, 450, 497, 629
MboI GATC 6 cut(s) 226, 316, 441, 448, 495, 627
MboII GAAGA 7 cut(s) 214, 226, 250, 349, 373, 549, 593
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 251, 516
MmeI TCCRAC 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 3 cut(s) 131, 305, 314
MvnI CGCG 2 cut(s) 68, 351
MwoI GCNNNNNNNGC 6 cut(s) 50, 275, 311, 398, 566, 596
NdeII GATC 6 cut(s) 226, 316, 441, 448, 495, 627
NlaIII CATG 1 cut(s) 409
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 338, 508
PciSI GCTCTTC 1 cut(s) 606
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 243, 348
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 70, 141, 243, 526
PkrI GCNGC 7 cut(s) 55, 82, 304, 367, 391, 394, 562
PshBI ATTAAT 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 32, 413
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 495
PvuII CAGCTG 2 cut(s) 131, 314
RseI CAYNNNNRTG 1 cut(s) 456
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 7 cut(s) 54, 81, 303, 366, 390, 393, 561
Sau3AI GATC 6 cut(s) 226, 316, 441, 448, 495, 627
Sau96I GGNCC 2 cut(s) 32, 413
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 1 cut(s) 377
SgrDI CGTCGACG 1 cut(s) 10
SinI GGWCC 2 cut(s) 32, 413
SmiMI CAYNNNNRTG 1 cut(s) 456
Sse9I AATT 2 cut(s) 251, 516
SsiI CCGC 6 cut(s) 44, 54, 80, 276, 300, 303
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 549
TaqI TCGA 5 cut(s) 11, 120, 225, 552, 604
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 251, 516
TauI GCSGC 3 cut(s) 56, 83, 305
TfiI GAWTC 4 cut(s) 70, 141, 243, 526
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 2 cut(s) 338, 508
TseI GCWGC 4 cut(s) 365, 389, 392, 560
Tsp45I GTSAC 2 cut(s) 338, 508
TspDTI ATGAA 2 cut(s) 16, 636
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 32, 413
VspI ATTAAT 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.