RLG00000003577

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005864
Physical Location & Seq
Reverse (-)
50218273 .. 50218971
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003577

Sequence Viewer

Length: 699 bp
ATGGAGCCAACACCACCCGCCAAATCCACCACACCTCCGCCGCCGCCTCCACTCCTCCGGCGATTAGTCGCAGTGGACACCAAGCTCTCTCAACAAATCCACATTCTCGCCAAACCCTTCCTCCCTCACTTCCTCCTCCTCCTCCTCGAACTCTCCGCCGACTTCCGATTATTCTTCCCCGTCGCCCTCTCCCTCCTCGCCGCTCCGCTCCTAAGCCCAGGCCCAAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCATTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAGGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGCCGCCCTCGCCGATGCTCTACTCCACCTCAGGTCGACGTCGTCGCCGGCCGTTGAGCGCTGGATCGGTGCCGATCAAGACAAGGCCGTTAGTGTTCTGGTCTCGGTCGTCTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCTTCGCCGGAGCTTGTTTGGGCGTGGTTGAGGGTGTAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

233

Amino Acids

25.15

Weight (kDa)

10.12

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 93 - 229 7.7e-19 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 500, 636
AccB1I GGYRCC 1 cut(s) 527
AccBSI CCGCTC 4 cut(s) 203, 208, 408, 440
AccI GTMKAC 3 cut(s) 354, 387, 494
AccII CGCG 1 cut(s) 342
AclWI GGATC 2 cut(s) 530, 611
AcoI YGGCCR 4 cut(s) 409, 507, 585, 613
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 2 cut(s) 497, 633
AfeI AGCGCT 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 600
AjnI CCWGG 2 cut(s) 217, 575
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 3 cut(s) 85, 647, 677
AluI AGCT 3 cut(s) 85, 647, 677
Alw26I GTCTC 2 cut(s) 565, 631
AlwI GGATC 2 cut(s) 530, 611
Ama87I CYCGRG 1 cut(s) 403
Aor51HI AGCGCT 1 cut(s) 518
AoxI GGCC 9 cut(s) 220, 289, 316, 409, 507, 543, 573, 585, 613
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 326
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspLEI GCGC 2 cut(s) 344, 519
AspS9I GGNCC 2 cut(s) 221, 573
AsuHPI GGTGA 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 403
AxyI CCTNAGG 1 cut(s) 488
BanI GGYRCC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 1 cut(s) 593
BccI CCATC 1 cut(s) 602
BceAI ACGGC 3 cut(s) 362, 494, 530
BciT130I CCWGG 2 cut(s) 219, 577
BcoDI GTCTC 2 cut(s) 565, 631
BfaI CTAG 2 cut(s) 420, 600
BfoI RGCGCY 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 219, 577
BmeT110I CYCGRG 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 221, 573
BmiI GGNNCC 2 cut(s) 6, 529
BmrFI CCNGG 2 cut(s) 219, 577
BmsI GCATC 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 497, 633
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 217, 286, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 1 cut(s) 505
Bse21I CCTNAGG 1 cut(s) 488
BseBI CCWGG 2 cut(s) 219, 577
BseDI CCNNGG 3 cut(s) 217, 286, 576
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 1 cut(s) 502
BseX3I CGGCCG 2 cut(s) 507, 613
BseXI GCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 4 cut(s) 387, 510, 567, 616
BshFI GGCC 9 cut(s) 222, 291, 318, 411, 509, 545, 575, 587, 615
BshNI GGYRCC 1 cut(s) 527
BsiEI CGRYCG 4 cut(s) 387, 510, 567, 616
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 3 cut(s) 58, 506, 642
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 2 cut(s) 565, 631
BsmBI CGTCTC 1 cut(s) 631
BsnI GGCC 9 cut(s) 222, 291, 318, 411, 509, 545, 575, 587, 615
Bso31I GGTCTC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 403
Bsp143I GATC 3 cut(s) 522, 532, 603
BspANI GGCC 9 cut(s) 222, 291, 318, 411, 509, 545, 575, 587, 615
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 6, 529
BspPI GGATC 2 cut(s) 530, 611
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 4 cut(s) 203, 208, 408, 440
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 3 cut(s) 217, 286, 576
BssMI GATC 3 cut(s) 522, 532, 603
BssNI GRCGYC 2 cut(s) 497, 633
Bst2UI CCWGG 2 cut(s) 219, 577
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 449
BstACI GRCGYC 2 cut(s) 497, 633
BstC8I GCNNGC 2 cut(s) 346, 507
BstDEI CTNAG 3 cut(s) 212, 488, 689
BstFNI CGCG 1 cut(s) 342
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 344, 519
BstKTI GATC 3 cut(s) 525, 535, 606
BstMAI GTCTC 2 cut(s) 565, 631
BstMBI GATC 3 cut(s) 522, 532, 603
BstMCI CGRYCG 4 cut(s) 387, 510, 567, 616
BstMWI GCNNNNNNNGC 3 cut(s) 345, 467, 581
BstNI CCWGG 2 cut(s) 219, 577
BstSCI CCNGG 2 cut(s) 217, 575
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BstZI CGGCCG 2 cut(s) 507, 613
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 9 cut(s) 222, 291, 318, 411, 509, 545, 575, 587, 615
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 346, 507
CfoI GCGC 2 cut(s) 344, 519
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 221, 573
CviAII CATG 1 cut(s) 367
DdeI CTNAG 3 cut(s) 212, 488, 689
DpnI GATC 3 cut(s) 524, 534, 605
DpnII GATC 3 cut(s) 522, 532, 603
EaeI YGGCCR 4 cut(s) 409, 507, 585, 613
EagI CGGCCG 2 cut(s) 507, 613
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
EciI GGCGGA 5 cut(s) 27, 145, 251, 326, 445
EclXI CGGCCG 2 cut(s) 507, 613
Eco31I GGTCTC 1 cut(s) 565
Eco47III AGCGCT 1 cut(s) 518
Eco52I CGGCCG 2 cut(s) 507, 613
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 217, 575
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 1 cut(s) 370
FaiI YATR 1 cut(s) 368
FatI CATG 1 cut(s) 366
FauI CCCGC 2 cut(s) 25, 353
FblI GTMKAC 3 cut(s) 354, 387, 494
FspBI CTAG 2 cut(s) 420, 600
GlaI GCGC 2 cut(s) 343, 518
GsuI CTGGAG 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 9 cut(s) 222, 291, 318, 411, 509, 545, 575, 587, 615
HapII CCGG 3 cut(s) 58, 506, 642
HhaI GCGC 2 cut(s) 344, 519
Hin1I GRCGYC 2 cut(s) 497, 633
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 2 cut(s) 342, 517
HinP1I GCGC 2 cut(s) 342, 517
HincII GTYRAC 2 cut(s) 388, 495
HindII GTYRAC 2 cut(s) 388, 495
HpaII CCGG 3 cut(s) 58, 506, 642
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 4 cut(s) 76, 355, 388, 495
Hpy188I TCNGA 3 cut(s) 167, 631, 692
Hpy188III TCNNGA 2 cut(s) 403, 536
Hpy8I GTNNAC 4 cut(s) 76, 355, 388, 495
Hpy99I CGWCG 7 cut(s) 185, 377, 437, 499, 502, 505, 635
HpyAV CCTTC 2 cut(s) 127, 409
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 372, 497, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 467, 581
HpyF3I CTNAG 3 cut(s) 212, 488, 689
HpySE526I ACGT 3 cut(s) 372, 497, 633
Hsp92I GRCGYC 2 cut(s) 497, 633
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 2 cut(s) 342, 517
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 522, 532, 603
LmnI GCTCC 4 cut(s) 4, 208, 213, 644
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 420, 600
MaeII ACGT 3 cut(s) 372, 497, 633
MalI GATC 3 cut(s) 524, 534, 605
MbiI CCGCTC 4 cut(s) 203, 208, 408, 440
MboI GATC 3 cut(s) 522, 532, 603
MboII GAAGA 3 cut(s) 166, 436, 628
MflI RGATCY 1 cut(s) 603
MluCI AATT 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 277, 654
MroNI GCCGGC 1 cut(s) 505
MseI TTAA 1 cut(s) 697
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 3 cut(s) 58, 506, 642
MspR9I CCNGG 2 cut(s) 219, 577
MvaI CCWGG 2 cut(s) 219, 577
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 345, 467, 581
NaeI GCCGGC 1 cut(s) 507
NdeII GATC 3 cut(s) 522, 532, 603
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 2 cut(s) 6, 529
NmeAIII GCCGAG 2 cut(s) 267, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 507
PflFI GACNNNGTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 217, 575
PspGI CCWGG 2 cut(s) 217, 575
PspN4I GGNNCC 2 cut(s) 6, 529
PspPI GGNCC 2 cut(s) 221, 573
PsuI RGATCY 1 cut(s) 603
PsyI GACNNNGTC 1 cut(s) 499
SalI GTCGAC 2 cut(s) 386, 493
SaqAI TTAA 1 cut(s) 697
Sau3AI GATC 3 cut(s) 522, 532, 603
Sau96I GGNCC 2 cut(s) 221, 573
ScrFI CCNGG 2 cut(s) 219, 577
SfaNI GCATC 1 cut(s) 463
Sse9I AATT 1 cut(s) 326
SspMI CTAG 2 cut(s) 420, 600
StyD4I CCNGG 2 cut(s) 217, 575
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 3 cut(s) 375, 500, 636
TaqI TCGA 4 cut(s) 147, 300, 387, 494
TaqII GACCGA 2 cut(s) 373, 553
TasI AATT 1 cut(s) 326
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 383, 671
TspRI CASTG 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 499
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 3 cut(s) 354, 387, 494
XspI CTAG 2 cut(s) 420, 600
ZraI GACGTC 2 cut(s) 498, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.