Rh7AG200100

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005864
Physical Location & Seq
Forward (+)
18128659 .. 18132952
4294 bp
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UTR
Exon/CDS
Intron
Rh7AG200100.1

Sequence Viewer

Length: 708 bp
ATGGAGCCAACACCACCCGCCAAATCCACCACTCATCCGCCGCCGCCGCCGCCACTCCTCCGGCGATTAGTCGCAATAGACACCAAGCTCTCTCAGCAAATCCACATTCTCGCCAAACCCTTCCTCCCTCACTTCCTCCTCCTCCTCCTCGAACTTTCCGCCGACTTCCGATTGTTCTTCCCCGTCGCCCTCTCCCTCCTCCTCGCCCCGCTCCTCAGCCCCGGCCCAGGCCCAAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCCTTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAAGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGCCGCCCTCGCCGATGCTCTACTCCACCTGAGGTCGTCGTCGCCGCCGGCCGTCGAGCGCTGGATCGGTGCCGATCAAGACAAGGCCGTTAGTGTTCTGGTGTCGGTCGTTTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCGTCGCCGGAGCTTGTTTGGGCGTGGTTGAGGGTGCAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

235

Amino Acids

25.39

Weight (kDa)

10.01

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 96 - 232 1.9e-19 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 536
AccBSI CCGCTC 3 cut(s) 211, 417, 449
AccI GTMKAC 2 cut(s) 363, 396
AccII CGCG 1 cut(s) 351
AclWI GGATC 2 cut(s) 539, 620
AcoI YGGCCR 4 cut(s) 418, 516, 594, 622
AcsI RAATTY 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 642
AfeI AGCGCT 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 227, 609
AjnI CCWGG 2 cut(s) 226, 584
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 88, 656, 686
AluI AGCT 3 cut(s) 88, 656, 686
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 2 cut(s) 539, 620
Ama87I CYCGRG 1 cut(s) 412
Aor51HI AGCGCT 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AspLEI GCGC 2 cut(s) 353, 528
AspS9I GGNCC 3 cut(s) 224, 230, 582
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 497
BanI GGYRCC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 602
BccI CCATC 1 cut(s) 611
BceAI ACGGC 3 cut(s) 371, 503, 539
BciT130I CCWGG 2 cut(s) 228, 586
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 640
BfaI CTAG 2 cut(s) 429, 609
BfoI RGCGCY 1 cut(s) 529
Bme1390I CCNGG 3 cut(s) 222, 228, 586
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 224, 230, 582
BmiI GGNNCC 2 cut(s) 6, 538
BmrFI CCNGG 3 cut(s) 222, 228, 586
BmsI GCATC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 4 cut(s) 220, 226, 295, 585
BsaXI ACNNNNNCTCC 8 cut(s) 108, 138, 233, 263, 389, 419, 620, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 609
Bse118I RCCGGY 1 cut(s) 514
Bse21I CCTNAGG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 228, 586
BseDI CCNNGG 4 cut(s) 220, 226, 295, 585
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 227, 609
BseMII CTCAG 3 cut(s) 107, 229, 488
BseX3I CGGCCG 2 cut(s) 516, 622
BseXI GCAGC 1 cut(s) 602
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 351
Bsh1285I CGRYCG 4 cut(s) 396, 519, 576, 625
BshNI GGYRCC 1 cut(s) 536
BsiEI CGRYCG 4 cut(s) 396, 519, 576, 625
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 4 cut(s) 61, 222, 515, 651
BslI CCNNNNNNNGG 2 cut(s) 227, 609
BsmAI GTCTC 1 cut(s) 640
BsmBI CGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 412
Bsp143I GATC 3 cut(s) 531, 541, 612
BspCNI CTCAG 3 cut(s) 106, 228, 489
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 6, 538
BspPI GGATC 2 cut(s) 539, 620
BspT107I GGYRCC 1 cut(s) 536
BsrBI CCGCTC 3 cut(s) 211, 417, 449
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 4 cut(s) 220, 226, 295, 585
BssMI GATC 3 cut(s) 531, 541, 612
BssNI GRCGYC 1 cut(s) 642
Bst2UI CCWGG 2 cut(s) 228, 586
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 458
BstACI GRCGYC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 355, 516
BstDEI CTNAG 4 cut(s) 93, 215, 497, 698
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 2 cut(s) 353, 528
BstKTI GATC 3 cut(s) 534, 544, 615
BstMAI GTCTC 1 cut(s) 640
BstMBI GATC 3 cut(s) 531, 541, 612
BstMCI CGRYCG 4 cut(s) 396, 519, 576, 625
BstMWI GCNNNNNNNGC 6 cut(s) 46, 49, 94, 354, 476, 590
BstNI CCWGG 2 cut(s) 228, 586
BstSCI CCNGG 3 cut(s) 220, 226, 584
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 612
BstYI RGATCY 1 cut(s) 612
BstZI CGGCCG 2 cut(s) 516, 622
Bsu36I CCTNAGG 1 cut(s) 497
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 2 cut(s) 355, 516
CfoI GCGC 2 cut(s) 353, 528
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 3 cut(s) 224, 230, 582
CviAII CATG 1 cut(s) 376
DdeI CTNAG 4 cut(s) 93, 215, 497, 698
DpnI GATC 3 cut(s) 533, 543, 614
DpnII GATC 3 cut(s) 531, 541, 612
EaeI YGGCCR 4 cut(s) 418, 516, 594, 622
EagI CGGCCG 2 cut(s) 516, 622
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
EciI GGCGGA 5 cut(s) 27, 148, 260, 335, 454
EclXI CGGCCG 2 cut(s) 516, 622
Eco47III AGCGCT 1 cut(s) 527
Eco52I CGGCCG 2 cut(s) 516, 622
Eco81I CCTNAGG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 226, 584
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 1 cut(s) 379
FaiI YATR 1 cut(s) 377
FatI CATG 1 cut(s) 375
FauI CCCGC 3 cut(s) 25, 216, 362
FblI GTMKAC 2 cut(s) 363, 396
FokI GGATG 1 cut(s) 21
FspBI CTAG 2 cut(s) 429, 609
GlaI GCGC 2 cut(s) 352, 527
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 529
HapII CCGG 4 cut(s) 61, 222, 515, 651
HhaI GCGC 2 cut(s) 353, 528
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 1 cut(s) 379
Hin6I GCGC 2 cut(s) 351, 526
HinP1I GCGC 2 cut(s) 351, 526
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HpaII CCGG 4 cut(s) 61, 222, 515, 651
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 364, 397
Hpy188I TCNGA 3 cut(s) 170, 640, 701
Hpy188III TCNNGA 2 cut(s) 412, 545
Hpy8I GTNNAC 2 cut(s) 364, 397
Hpy99I CGWCG 9 cut(s) 188, 386, 446, 508, 511, 524, 644, 647, 650
HpyAV CCTTC 3 cut(s) 130, 286, 418
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 381, 642
HpyCH4V TGCA 1 cut(s) 680
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 49, 94, 354, 476, 590
HpyF3I CTNAG 4 cut(s) 93, 215, 497, 698
HpySE526I ACGT 2 cut(s) 381, 642
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 1 cut(s) 379
HspAI GCGC 2 cut(s) 351, 526
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Kzo9I GATC 3 cut(s) 531, 541, 612
LmnI GCTCC 3 cut(s) 4, 216, 653
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 429, 609
MaeII ACGT 2 cut(s) 381, 642
MalI GATC 3 cut(s) 533, 543, 614
MbiI CCGCTC 3 cut(s) 211, 417, 449
MboI GATC 3 cut(s) 531, 541, 612
MboII GAAGA 2 cut(s) 169, 445
MflI RGATCY 1 cut(s) 612
MluCI AATT 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 286, 663
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 4 cut(s) 61, 222, 515, 651
MspR9I CCNGG 3 cut(s) 222, 228, 586
MvaI CCWGG 2 cut(s) 228, 586
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 6 cut(s) 46, 49, 94, 354, 476, 590
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 222
NdeII GATC 3 cut(s) 531, 541, 612
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 6, 538
NmeAIII GCCGAG 2 cut(s) 276, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 226, 584
PspGI CCWGG 2 cut(s) 226, 584
PspN4I GGNNCC 2 cut(s) 6, 538
PspPI GGNCC 3 cut(s) 224, 230, 582
PsuI RGATCY 1 cut(s) 612
PsyI GACNNNGTC 1 cut(s) 644
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 706
Sau3AI GATC 3 cut(s) 531, 541, 612
Sau96I GGNCC 3 cut(s) 224, 230, 582
ScrFI CCNGG 3 cut(s) 222, 228, 586
SetI ASST 9 cut(s) 90, 315, 384, 462, 498, 503, 645, 658, 688
SfaNI GCATC 1 cut(s) 472
Sse9I AATT 1 cut(s) 335
SspMI CTAG 2 cut(s) 429, 609
StyD4I CCNGG 3 cut(s) 220, 226, 584
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 384, 645
TaqI TCGA 4 cut(s) 150, 309, 396, 522
TaqII GACCGA 2 cut(s) 382, 562
TasI AATT 1 cut(s) 335
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 392, 680
Tth111I GACNNNGTC 1 cut(s) 644
XapI RAATTY 1 cut(s) 335
XmiI GTMKAC 2 cut(s) 363, 396
XspI CTAG 2 cut(s) 429, 609
ZraI GACGTC 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.