Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005864

Physical Location & Seq

Genomic Coordinates Reverse (-)

5538682 .. 5541404

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0072200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTGTGGACCTTGTATGGGTTACCCATCGTGCACCCGGATAGCACTCTGGTGTGGACCATAAACGGGTCGGGTATGGTCATCGAGGTCGTCTACATCATCCTCTTCCTCATTTATTCCGACAAGAAAAAGAGGCTTGTGGTGGTTCTGGTGGTGGCTGTGGAGATCATATTCCTTGGTGTTCTTACCGCTCTGGTTCTCACTTTGGCTCACACGCATACCAAGAGGTCCTTGATTGTGGGCATCATATGCATTGCCTTCAACATCATGATGTATGCTGCACCATTGACCGTCATGAAAATGGTGATCACTACAAAAAGTGTGGAGTACATGCCATTTTTCCTCTCGTTTGCTTCCTTTGCGAATGGTCTTGCCTGGACTGCATATGCTCTCATCCGCTTTGACCCCTTCATCACTATTCCTAACGGGCTGGGCACAGTTTTTGGTTTAGCTCAGCTGCTTCTGTATGCCACATACTACAAGTCGACTCAGCGACAGATAGCAGAAAGGAAAGGCAGGGAGGTGAACTTGTCAGAGGTGACTATAGATGATGAACCCAAAAAGATAGGCAGCCATACTAATCAGAATAGCCACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2

Protein Analysis

199

Amino Acids

22.23

Weight (kDa)

9.16

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	1 - 44	8.6e-07	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	79 - 163	2.2e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22550
fragaria_vesca	FvH4_5g00170 FvH4_5g00170 FvH4_5g00170
malus_domestica	MD04G1086000.v1.1 MD06G1062400.v1.1
prunus_persica	Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1
pyrus_communis	pycom06g06130
rosa_chinensis	RchiOBHm_Chr7g0202701
rosa_laevigata	RLG00000003577
rosa_multiflora	Rmu_sc0002158.1_g000005 Rmu_sc0002158.1_g000006 Rmu_sc0002158.1_g000007
rosa_roxburghii	Rroxscaffold_3G00254350
rosa_rugosa	Rorug07G0072200 Rorug07G0072200 Rorug07G0072300 Rorug07G0072400 Rorug07G0072500 Rorug07G0072600
rosa_samantha	Rh7AG200100 Rh7BG200700 Rh7CG211500 Rh7DG207000
rosa_wichuraiana	Rw7G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AccI	GTMKAC	2 cut(s)	93, 485
AciI	CCGC	2 cut(s)	189, 397
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	18, 66
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	374
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	452, 457
AluI	AGCT	2 cut(s)	452, 457
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	278, 457, 570
AspS9I	GGNCC	3 cut(s)	9, 57, 228
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	316, 535, 550
AvaII	GGWCC	3 cut(s)	9, 57, 228
BaeGI	GKGCMC	2 cut(s)	36, 437
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	265, 444, 582
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	3 cut(s)	279, 458, 571
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	3 cut(s)	280, 459, 572
Bme1390I	CCNGG	2 cut(s)	38, 376
Bme18I	GGWCC	3 cut(s)	9, 57, 228
BmgT120I	GGNCC	3 cut(s)	9, 57, 228
BmrFI	CCNGG	2 cut(s)	38, 376
BmsI	GCATC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 66
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	99, 393
BseLI	CCNNNNNNNGG	2 cut(s)	18, 66
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	467, 503
BseSI	GKGCMC	2 cut(s)	36, 437
BseXI	GCAGC	3 cut(s)	265, 444, 582
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	18, 66
Bsp1286I	GDGCHC	2 cut(s)	36, 437
Bsp143I	GATC	2 cut(s)	165, 306
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	189, 397
BspCNI	CTCAG	2 cut(s)	466, 502
BspHI	TCATGA	2 cut(s)	267, 294
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	165, 306
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	292, 439
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	453, 489
BstEII	GGTNACC	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	99, 393
BstKTI	GATC	2 cut(s)	168, 309
BstMBI	GATC	2 cut(s)	165, 306
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 359, 380
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	334
BstPI	GGTNACC	1 cut(s)	21
BstSCI	CCNGG	2 cut(s)	36, 374
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	2 cut(s)	36, 437
BstV1I	GCAGC	3 cut(s)	265, 444, 582
BtsCI	GGATG	2 cut(s)	99, 393
CciI	TCATGA	2 cut(s)	267, 294
Cfr13I	GGNCC	3 cut(s)	9, 57, 228
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	3 cut(s)	268, 295, 331
CviJI	RGCY	8 cut(s)	136, 158, 209, 430, 452, 457, 573, 591
CviKI_1	RGCY	8 cut(s)	136, 158, 209, 430, 452, 457, 573, 591
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	453, 489
DpnI	GATC	2 cut(s)	167, 308
DpnII	GATC	2 cut(s)	165, 306
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	3 cut(s)	9, 57, 228
Eco91I	GGTNACC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	228
EcoO65I	GGTNACC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	3 cut(s)	271, 298, 334
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	3 cut(s)	267, 294, 330
FauNDI	CATATG	2 cut(s)	248, 385
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	2 cut(s)	93, 485
Fnu4HI	GCNGC	3 cut(s)	279, 458, 571
FokI	GGATG	2 cut(s)	86, 380
Fsp4HI	GCNGC	3 cut(s)	279, 458, 571
GluI	GCNGC	3 cut(s)	279, 458, 571
GsaI	CCCAGC	1 cut(s)	434
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	3 cut(s)	271, 298, 334
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	3 cut(s)	316, 535, 550
Hpy166II	GTNNAC	6 cut(s)	9, 34, 57, 94, 486, 526
Hpy188I	TCNGA	3 cut(s)	121, 535, 585
Hpy188III	TCNNGA	2 cut(s)	268, 295
Hpy8I	GTNNAC	6 cut(s)	9, 34, 57, 94, 486, 526
HpyAV	CCTTC	2 cut(s)	268, 418
HpyCH4III	ACNGT	2 cut(s)	292, 439
HpyCH4V	TGCA	4 cut(s)	34, 252, 281, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 359, 380
HpyF3I	CTNAG	2 cut(s)	453, 489
Hsp92II	CATG	3 cut(s)	271, 298, 334
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	165, 306
LpnPI	CCDG	8 cut(s)	35, 51, 134, 179, 361, 388, 416, 502
Lsp1109I	GCAGC	3 cut(s)	265, 444, 582
LweI	GCATC	1 cut(s)	252
MaeIII	GTNAC	2 cut(s)	21, 538
MalI	GATC	2 cut(s)	167, 308
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	2 cut(s)	165, 306
MboII	GAAGA	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	36, 437
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	8 cut(s)	79, 113, 119, 126, 219, 353, 514, 529
Mph1103I	ATGCAT	1 cut(s)	254
MslI	CAYNNNNRTG	3 cut(s)	50, 269, 299
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	38, 376
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	249, 359, 380
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	2 cut(s)	248, 385
NdeII	GATC	2 cut(s)	165, 306
NlaIII	CATG	3 cut(s)	271, 298, 334
NmuCI	GTSAC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	50
PagI	TCATGA	2 cut(s)	267, 294
PkrI	GCNGC	3 cut(s)	280, 459, 572
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	374
PspEI	GGTNACC	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	374
PspPI	GGNCC	3 cut(s)	9, 57, 228
PspPPI	RGGWCCY	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	3 cut(s)	50, 269, 299
SalI	GTCGAC	1 cut(s)	484
SatI	GCNGC	3 cut(s)	279, 458, 571
Sau3AI	GATC	2 cut(s)	165, 306
Sau96I	GGNCC	3 cut(s)	9, 57, 228
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	38, 376
SduI	GDGCHC	2 cut(s)	36, 437
SetI	ASST	7 cut(s)	14, 90, 230, 454, 459, 525, 540
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	3 cut(s)	9, 57, 228
SmiMI	CAYNNNNRTG	3 cut(s)	50, 269, 299
SsiI	CCGC	2 cut(s)	189, 397
StyD4I	CCNGG	2 cut(s)	36, 374
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	292, 439
TaqI	TCGA	2 cut(s)	84, 485
TatI	WGTACW	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	3 cut(s)	278, 457, 570
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	311, 400, 567
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	3 cut(s)	9, 57, 228
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	93, 485
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.