pycom06g06130

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005864
Physical Location & Seq
Forward (+)
9422675 .. 9423645
971 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06130.1

Sequence Viewer

Length: 906 bp
ATGTCCATAATATCGTTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAACAATATCAAGTCATCCGAAGAGTAATTTGAATCCCTTTTTGGATTCTAGTCCAGTCCAAATATTCCTTAACTACCTCTTTGGTTGGTTCCCAAATCCCAACTGTCCAACCCAACGGCCTAGCCATCTCACACACACACACACACTGACATTCAACCATGGAGGCAGCACCACCACCACCGCAGCGCCACCTCCACAGCCACCAATGCTCGGCAGCTTAGTAGCTCTAGATACGACCGTCTCCCAACATCTCCACGTCCTCGCCAAACCCTTCCTCCCCCACTCCCTCCTCCTCCTCGAACTCTCCGCCGACTTCCGCTTCTTCTTCCCTCTCTCCCTCTCCCTCCTCCTTGCCCCGAGCCCAGACCCAAGCCCAACCCAAATCCTCCGCCCACTCCTCTCCCCACTCATCTTCGGCCTCCTTCTCGACCTCGCCGTCGGCCTAATCAAACTCCTCTTTCGCCGCTCCCGCCCTCTCTACAACAAGAAGATGAGCGTCGCCGTTTCGGTAGACCACTTCTCCTTCCCCAGCGGACACTCCTCTCGGGTTTGCTTCGTCGCCTCCGTTTTGCACCTCTCCGCCGCCGCCCGCACCGATGCCCTCGCCAACCTACGGTCAGCGTCTCCCTTCGTTGATCGTTGGATCGGCGCGGACGAGGTCAATGCCGTGAGGATTTTGATCTCGGTTGCTTGGGCCTGGGCCGTCGGCACCTCCGTCTCTAGGGTTTGCTGGGTAGGCATTTCGTCAACGACGTTTTCACCGGGGCGTGTTTGGGCGTGCTTGAGGATCTGGTTTCGTTTCCTTGCTGAGGTTCTAAGGTATGAATTGCTTAGCACTGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

302

Amino Acids

33.38

Weight (kDa)

10.32

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 156 - 263 1.3e-07 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 710
AclWI GGATC 2 cut(s) 710, 854
AfiI CCNNNNNNNGG 4 cut(s) 269, 672, 780, 868
AgsI TTSAA 2 cut(s) 91, 214
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 755
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 276, 284
AluI AGCT 2 cut(s) 276, 284
Alw26I GTCTC 3 cut(s) 304, 687, 781
AlwI GGATC 2 cut(s) 710, 854
Ama87I CYCGRG 2 cut(s) 415, 603
AoxI GGCC 5 cut(s) 176, 475, 499, 753, 759
ApeKI GCWGC 3 cut(s) 225, 242, 273
AspLEI GCGC 2 cut(s) 247, 710
AspS9I GGNCC 2 cut(s) 753, 759
AsuC2I CCSGG 1 cut(s) 822
AsuHPI GGTGA 1 cut(s) 810
AvaI CYCGRG 2 cut(s) 415, 603
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 867
BbvI GCAGC 3 cut(s) 237, 254, 285
BccI CCATC 1 cut(s) 192
BceAI ACGGC 5 cut(s) 191, 479, 545, 710, 746
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 1 cut(s) 757
BcnI CCSGG 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 304, 687, 781
BfaI CTAG 4 cut(s) 108, 180, 287, 780
BfoI RGCGCY 1 cut(s) 248
BisI GCNGC 6 cut(s) 226, 243, 274, 523, 642, 645
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 6 cut(s) 227, 244, 275, 524, 643, 646
Bme1390I CCNGG 2 cut(s) 757, 822
BmeT110I CYCGRG 2 cut(s) 415, 603
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 2 cut(s) 753, 759
BmiI GGNNCC 2 cut(s) 149, 769
BmrFI CCNGG 2 cut(s) 757, 822
BmsI GCATC 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 862
BpuMI CCSGG 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 217, 756, 821
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 563, 593
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 672, 780, 868
Bse1I ACTGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 737
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 3 cut(s) 217, 756, 821
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 737
BseLI CCNNNNNNNGG 4 cut(s) 269, 672, 780, 868
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 7 cut(s) 338, 341, 344, 395, 446, 503, 589
BseXI GCAGC 3 cut(s) 237, 254, 285
BseYI CCCAGC 2 cut(s) 587, 789
Bsh1236I CGCG 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 5 cut(s) 178, 477, 501, 755, 761
BshNI GGYRCC 1 cut(s) 767
BsiEI CGRYCG 1 cut(s) 297
BsiHKCI CYCGRG 2 cut(s) 415, 603
BsiSI CCGG 1 cut(s) 821
BslI CCNNNNNNNGG 4 cut(s) 269, 672, 780, 868
BsmAI GTCTC 3 cut(s) 304, 687, 781
BsmBI CGTCTC 3 cut(s) 304, 687, 781
BsnI GGCC 5 cut(s) 178, 477, 501, 755, 761
BsoBI CYCGRG 2 cut(s) 415, 603
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 4 cut(s) 694, 702, 738, 846
Bsp1720I GCTNAGC 1 cut(s) 890
Bsp19I CCATGG 1 cut(s) 217
BspANI GGCC 5 cut(s) 178, 477, 501, 755, 761
BspCNI CTCAG 1 cut(s) 859
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 2 cut(s) 149, 769
BspPI GGATC 2 cut(s) 710, 854
BspT107I GGYRCC 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 525
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 217, 756, 821
BssMI GATC 4 cut(s) 694, 702, 738, 846
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 3 cut(s) 164, 298, 675
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 649, 838
BstDEI CTNAG 4 cut(s) 277, 867, 875, 890
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 866
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 247, 710
BstKTI GATC 4 cut(s) 697, 705, 741, 849
BstMAI GTCTC 3 cut(s) 304, 687, 781
BstMBI GATC 4 cut(s) 694, 702, 738, 846
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 3 cut(s) 265, 528, 795
BstNI CCWGG 1 cut(s) 757
BstSCI CCNGG 2 cut(s) 755, 820
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 3 cut(s) 237, 254, 285
BstX2I RGATCY 1 cut(s) 846
BstYI RGATCY 1 cut(s) 846
BsuRI GGCC 5 cut(s) 178, 477, 501, 755, 761
BtgI CCRYGG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 203, 894
Cac8I GCNNGC 2 cut(s) 649, 838
CfoI GCGC 2 cut(s) 247, 710
Cfr13I GGNCC 2 cut(s) 753, 759
CseI GACGC 2 cut(s) 544, 669
CviAII CATG 1 cut(s) 218
DdeI CTNAG 4 cut(s) 277, 867, 875, 890
DpnI GATC 4 cut(s) 696, 704, 740, 848
DpnII GATC 4 cut(s) 694, 702, 738, 846
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 3 cut(s) 355, 437, 628
Eco130I CCWWGG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 422
Eco88I CYCGRG 2 cut(s) 415, 603
EcoNI CCTNNNNNAGG 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 3 cut(s) 304, 687, 781
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 8, 219, 882
FatI CATG 1 cut(s) 217
FauI CCCGC 2 cut(s) 536, 656
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 6 cut(s) 226, 243, 274, 523, 642, 645
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 6 cut(s) 226, 243, 274, 523, 642, 645
FspBI CTAG 4 cut(s) 108, 180, 287, 780
GlaI GCGC 2 cut(s) 246, 709
GluI GCNGC 6 cut(s) 226, 243, 274, 523, 642, 645
GsaI CCCAGC 2 cut(s) 591, 793
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 5 cut(s) 178, 477, 501, 755, 761
HapII CCGG 1 cut(s) 821
HgaI GACGC 2 cut(s) 544, 669
HhaI GCGC 2 cut(s) 247, 710
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 2 cut(s) 245, 708
HinP1I GCGC 2 cut(s) 245, 708
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HinfI GANTC 2 cut(s) 91, 104
HpaII CCGG 1 cut(s) 821
HphI GGTGA 1 cut(s) 810
Hpy166II GTNNAC 2 cut(s) 571, 807
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 287, 485
Hpy8I GTNNAC 2 cut(s) 571, 807
Hpy99I CGWCG 5 cut(s) 500, 560, 620, 767, 814
HpyAV CCTTC 4 cut(s) 340, 491, 592, 697
HpyCH4III ACNGT 3 cut(s) 164, 298, 675
HpyCH4IV ACGT 2 cut(s) 315, 812
HpyCH4V TGCA 1 cut(s) 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 528, 795
HpyF3I CTNAG 4 cut(s) 277, 867, 875, 890
HpySE526I ACGT 2 cut(s) 315, 812
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 2 cut(s) 245, 708
Kzo9I GATC 4 cut(s) 694, 702, 738, 846
LmnI GCTCC 1 cut(s) 530
LpnPI CCDG 8 cut(s) 126, 435, 601, 742, 769, 775, 834, 835
Lsp1109I GCAGC 3 cut(s) 237, 254, 285
LweI GCATC 1 cut(s) 646
MaeI CTAG 4 cut(s) 108, 180, 287, 780
MaeII ACGT 2 cut(s) 315, 812
MalI GATC 4 cut(s) 696, 704, 740, 848
MbiI CCGCTC 1 cut(s) 525
MboI GATC 4 cut(s) 694, 702, 738, 846
MboII GAAGA 5 cut(s) 91, 373, 376, 463, 559
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 3 cut(s) 85, 884, 901
MmeI TCCRAC 2 cut(s) 191, 680
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 2 cut(s) 757, 822
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 265, 528, 795
NciI CCSGG 1 cut(s) 822
NcoI CCATGG 1 cut(s) 217
NdeII GATC 4 cut(s) 694, 702, 738, 846
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 149, 769
NmeAIII GCCGAG 1 cut(s) 249
PcsI WCGNNNNNNNCGW 5 cut(s) 492, 621, 711, 771, 809
PfeI GAWTC 2 cut(s) 91, 104
PflFI GACNNNGTC 1 cut(s) 716
PkrI GCNGC 6 cut(s) 227, 244, 275, 524, 643, 646
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 2 cut(s) 587, 789
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 2 cut(s) 149, 769
PspPI GGNCC 2 cut(s) 753, 759
PsuI RGATCY 1 cut(s) 846
PsyI GACNNNGTC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 6 cut(s) 226, 243, 274, 523, 642, 645
Sau3AI GATC 4 cut(s) 694, 702, 738, 846
Sau96I GGNCC 2 cut(s) 753, 759
ScrFI CCNGG 2 cut(s) 757, 822
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 1 cut(s) 646
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 3 cut(s) 85, 884, 901
SspI AATATT 1 cut(s) 123
SspMI CTAG 4 cut(s) 108, 180, 287, 780
StyD4I CCNGG 2 cut(s) 755, 820
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 3 cut(s) 164, 298, 675
TaiI ACGT 2 cut(s) 318, 815
TaqI TCGA 2 cut(s) 357, 486
TasI AATT 3 cut(s) 85, 884, 901
TauI GCSGC 3 cut(s) 525, 644, 647
TfiI GAWTC 2 cut(s) 91, 104
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 210, 901
TseI GCWGC 3 cut(s) 225, 242, 273
TspDTI ATGAA 1 cut(s) 897
TspGWI ACGGA 2 cut(s) 613, 763
TspRI CASTG 2 cut(s) 210, 901
Tth111I GACNNNGTC 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 4 cut(s) 108, 180, 287, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.