Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002158.1

Orthogroup ID

OG0005864

Physical Location & Seq

Genomic Coordinates Forward (+)

7404 .. 8111

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002158.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggagccaacaccacccgccaaatccaccacacatccgccgccgccgccgccactcctccggcgattagtcgcaatagacaccaagctctctcaacaaatccacattctcgccaaacccttcctccctcacttcctcctcctcctcctcgaactctccgccgacttccgattattcttccccgtcgccctctccctcctcctcgccccgctcctcagccccggcccaggcccaaacccgaacccgaactccagcccaatccaactcctccgcccattcctctcccctctcctcctcggcctcctcctcgacctcgccctaatcggcctcatcaaattcaccgtccgccgcgcccgccccgtctacaacaagaacatgaacgtcgccgtttcggtcgaccacttctccttcccgagcggccacgcctctagggtttgcttcgtcgccgctctcttccacctctccgccgccgccctcgccgatgctctactccacctcaggtcgaagtcgccgccggccgtcgagcgctggatcggtgccgatcaagacaaggccgtcagtgttctgctgtcggtcgtttgggcctgggcagcggccacttccatctctaggatcttgctcggccgccacttcgtctccgacgtcttcgccggagcttgtttgggcgtggttgagggtgcagtagcttttcatttcctcagattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2

Protein Analysis

235

Amino Acids

25.46

Weight (kDa)

10.2

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22550
fragaria_vesca	FvH4_5g00170 FvH4_5g00170 FvH4_5g00170
malus_domestica	MD04G1086000.v1.1 MD06G1062400.v1.1
prunus_persica	Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1
pyrus_communis	pycom06g06130
rosa_chinensis	RchiOBHm_Chr7g0202701
rosa_laevigata	RLG00000003577
rosa_multiflora	Rmu_sc0002158.1_g000005 Rmu_sc0002158.1_g000006 Rmu_sc0002158.1_g000007
rosa_roxburghii	Rroxscaffold_3G00254350
rosa_rugosa	Rorug07G0072200 Rorug07G0072200 Rorug07G0072300 Rorug07G0072400 Rorug07G0072500 Rorug07G0072600
rosa_samantha	Rh7AG200100 Rh7BG200700 Rh7CG211500 Rh7DG207000
rosa_wichuraiana	Rw7G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AatII	GACGTC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	536
AccBSI	CCGCTC	3 cut(s)	211, 417, 449
AccI	GTMKAC	2 cut(s)	363, 396
AccII	CGCG	1 cut(s)	351
AclWI	GGATC	2 cut(s)	539, 620
AcoI	YGGCCR	4 cut(s)	418, 516, 594, 622
AcsI	RAATTY	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	642
AfeI	AGCGCT	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	227, 609
AjnI	CCWGG	2 cut(s)	226, 584
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	88, 656, 686
AluI	AGCT	3 cut(s)	88, 656, 686
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	539, 620
Ama87I	CYCGRG	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	1 cut(s)	335
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
AspLEI	GCGC	2 cut(s)	353, 528
AspS9I	GGNCC	3 cut(s)	224, 230, 582
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	637
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	3 cut(s)	371, 503, 539
BciT130I	CCWGG	2 cut(s)	228, 586
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	429, 609
BfoI	RGCGCY	1 cut(s)	529
Bme1390I	CCNGG	3 cut(s)	222, 228, 586
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	224, 230, 582
BmiI	GGNNCC	2 cut(s)	6, 538
BmrFI	CCNGG	3 cut(s)	222, 228, 586
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	4 cut(s)	220, 226, 295, 585
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 138, 233, 263, 389, 419, 620, 650
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 609
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	228, 586
BseDI	CCNNGG	4 cut(s)	220, 226, 295, 585
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	227, 609
BseMII	CTCAG	2 cut(s)	229, 511
BseX3I	CGGCCG	2 cut(s)	516, 622
BseXI	GCAGC	1 cut(s)	602
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	4 cut(s)	396, 519, 576, 625
BshNI	GGYRCC	1 cut(s)	536
BsiEI	CGRYCG	4 cut(s)	396, 519, 576, 625
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	61, 222, 515, 651
BslI	CCNNNNNNNGG	2 cut(s)	227, 609
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsoBI	CYCGRG	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	531, 541, 612
BspCNI	CTCAG	2 cut(s)	228, 510
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	6, 538
BspPI	GGATC	2 cut(s)	539, 620
BspT107I	GGYRCC	1 cut(s)	536
BsrBI	CCGCTC	3 cut(s)	211, 417, 449
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	4 cut(s)	220, 226, 295, 585
BssMI	GATC	3 cut(s)	531, 541, 612
BssNI	GRCGYC	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	228, 586
Bst4CI	ACNGT	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	458
BstACI	GRCGYC	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	355, 516
BstDEI	CTNAG	3 cut(s)	215, 497, 698
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	2 cut(s)	353, 528
BstKTI	GATC	3 cut(s)	534, 544, 615
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	3 cut(s)	531, 541, 612
BstMCI	CGRYCG	4 cut(s)	396, 519, 576, 625
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 49, 354, 476, 590
BstNI	CCWGG	2 cut(s)	228, 586
BstSCI	CCNGG	3 cut(s)	220, 226, 584
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BstZI	CGGCCG	2 cut(s)	516, 622
Bsu36I	CCTNAGG	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	355, 516
CfoI	GCGC	2 cut(s)	353, 528
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	3 cut(s)	224, 230, 582
CviAII	CATG	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	215, 497, 698
DpnI	GATC	3 cut(s)	533, 543, 614
DpnII	GATC	3 cut(s)	531, 541, 612
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EaeI	YGGCCR	4 cut(s)	418, 516, 594, 622
EagI	CGGCCG	2 cut(s)	516, 622
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	5 cut(s)	27, 148, 260, 335, 454
EclXI	CGGCCG	2 cut(s)	516, 622
Eco47III	AGCGCT	1 cut(s)	527
Eco52I	CGGCCG	2 cut(s)	516, 622
Eco81I	CCTNAGG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	226, 584
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	1 cut(s)	379
FaiI	YATR	1 cut(s)	377
FatI	CATG	1 cut(s)	375
FauI	CCCGC	3 cut(s)	25, 216, 362
FblI	GTMKAC	2 cut(s)	363, 396
FokI	GGATG	1 cut(s)	21
FspBI	CTAG	2 cut(s)	429, 609
GlaI	GCGC	2 cut(s)	352, 527
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	529
HapII	CCGG	4 cut(s)	61, 222, 515, 651
HhaI	GCGC	2 cut(s)	353, 528
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	2 cut(s)	351, 526
HinP1I	GCGC	2 cut(s)	351, 526
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HpaII	CCGG	4 cut(s)	61, 222, 515, 651
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	364, 397
Hpy188I	TCNGA	3 cut(s)	170, 640, 701
Hpy188III	TCNNGA	2 cut(s)	412, 545
Hpy8I	GTNNAC	2 cut(s)	364, 397
Hpy99I	CGWCG	5 cut(s)	188, 386, 446, 524, 644
HpyAV	CCTTC	2 cut(s)	130, 418
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	381, 642
HpyCH4V	TGCA	1 cut(s)	680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 49, 354, 476, 590
HpyF3I	CTNAG	3 cut(s)	215, 497, 698
HpySE526I	ACGT	2 cut(s)	381, 642
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	2 cut(s)	351, 526
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
Kzo9I	GATC	3 cut(s)	531, 541, 612
LmnI	GCTCC	3 cut(s)	4, 216, 653
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	429, 609
MaeII	ACGT	2 cut(s)	381, 642
MalI	GATC	3 cut(s)	533, 543, 614
MbiI	CCGCTC	3 cut(s)	211, 417, 449
MboI	GATC	3 cut(s)	531, 541, 612
MboII	GAAGA	3 cut(s)	169, 445, 637
MflI	RGATCY	1 cut(s)	612
MluCI	AATT	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	286, 663
MroNI	GCCGGC	1 cut(s)	514
MseI	TTAA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	4 cut(s)	61, 222, 515, 651
MspR9I	CCNGG	3 cut(s)	222, 228, 586
MvaI	CCWGG	2 cut(s)	228, 586
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	5 cut(s)	46, 49, 354, 476, 590
NaeI	GCCGGC	1 cut(s)	516
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	531, 541, 612
NgoMIV	GCCGGC	1 cut(s)	514
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	6, 538
NmeAIII	GCCGAG	2 cut(s)	276, 600
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PdiI	GCCGGC	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	226, 584
PspGI	CCWGG	2 cut(s)	226, 584
PspN4I	GGNNCC	2 cut(s)	6, 538
PspPI	GGNCC	3 cut(s)	224, 230, 582
PsuI	RGATCY	1 cut(s)	612
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	706
Sau3AI	GATC	3 cut(s)	531, 541, 612
Sau96I	GGNCC	3 cut(s)	224, 230, 582
ScrFI	CCNGG	3 cut(s)	222, 228, 586
SetI	ASST	9 cut(s)	90, 315, 384, 462, 498, 503, 645, 658, 688
SfaNI	GCATC	1 cut(s)	472
Sse9I	AATT	1 cut(s)	335
SspMI	CTAG	2 cut(s)	429, 609
StyD4I	CCNGG	3 cut(s)	220, 226, 584
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	2 cut(s)	384, 645
TaqI	TCGA	5 cut(s)	150, 309, 396, 503, 522
TaqII	GACCGA	2 cut(s)	382, 562
TasI	AATT	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	1 cut(s)	590
TspDTI	ATGAA	2 cut(s)	392, 680
TspRI	CASTG	1 cut(s)	565
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	2 cut(s)	363, 396
XspI	CTAG	2 cut(s)	429, 609
ZraI	GACGTC	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.