Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002158.1

Orthogroup ID

OG0005864

Physical Location & Seq

Genomic Coordinates Forward (+)

11696 .. 12355

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002158.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggagccaacaccacccgccaaatccaccacacatccgccgccgccgccgccactcctccggcgattagtcgcaatagacaccaagctctctcaacaaatccacattctcgccaaacccttcctccctcacttcctcctcctcctcctcgaactctccgccgacttccgattattcttccccgtcgccctctccctcctcctcgccccgctcctcagccccggcccaggcccaaacccgaacccgaacccgaactccagcccaatccaactcctccgcccattcctctcccctctcctcctcggcctcctcctcgacctcgccctaatcggcctcatcaaattcaccgtccgccgcgcccgccccgtctacaacaagaacatgaacgtcgccgtttcggtcgaccacttctccttcccgagcggccacgcctctagggtttgcttcgtcgccgctctcttccacctctccgccgccgccctcgccgatgctctactccacctcaggtcgaagtcgccgccggccgtcgagcgctggatcggtgccgatcaagacaaggccgtcagtgttctgctgtcggtcgtttgggcctgggcagcggccacttccatctctaggatcttgctcggccgccacttcgtctccgacgtcttcgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2

Protein Analysis

219

Amino Acids

23.8

Weight (kDa)

10.41

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22550
fragaria_vesca	FvH4_5g00170 FvH4_5g00170 FvH4_5g00170
malus_domestica	MD04G1086000.v1.1 MD06G1062400.v1.1
prunus_persica	Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1
pyrus_communis	pycom06g06130
rosa_chinensis	RchiOBHm_Chr7g0202701
rosa_laevigata	RLG00000003577
rosa_multiflora	Rmu_sc0002158.1_g000005 Rmu_sc0002158.1_g000006 Rmu_sc0002158.1_g000007
rosa_roxburghii	Rroxscaffold_3G00254350
rosa_rugosa	Rorug07G0072200 Rorug07G0072200 Rorug07G0072300 Rorug07G0072400 Rorug07G0072500 Rorug07G0072600
rosa_samantha	Rh7AG200100 Rh7BG200700 Rh7CG211500 Rh7DG207000
rosa_wichuraiana	Rw7G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AatII	GACGTC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	542
AccBSI	CCGCTC	3 cut(s)	211, 423, 455
AccI	GTMKAC	2 cut(s)	369, 402
AccII	CGCG	1 cut(s)	357
AclWI	GGATC	2 cut(s)	545, 626
AcoI	YGGCCR	4 cut(s)	424, 522, 600, 628
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	648
AfeI	AGCGCT	1 cut(s)	533
AfiI	CCNNNNNNNGG	2 cut(s)	227, 615
AjnI	CCWGG	2 cut(s)	226, 590
AloI	GAACNNNNNNTCC	2 cut(s)	239, 271
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	2 cut(s)	545, 626
Ama87I	CYCGRG	1 cut(s)	418
Aor51HI	AGCGCT	1 cut(s)	533
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	2 cut(s)	359, 534
AspS9I	GGNCC	3 cut(s)	224, 230, 588
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	418
AxyI	CCTNAGG	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	643
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	3 cut(s)	377, 509, 545
BciT130I	CCWGG	2 cut(s)	228, 592
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	2 cut(s)	435, 615
BfoI	RGCGCY	1 cut(s)	535
Bme1390I	CCNGG	3 cut(s)	222, 228, 592
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	224, 230, 588
BmiI	GGNNCC	2 cut(s)	6, 544
BmrFI	CCNGG	3 cut(s)	222, 228, 592
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	4 cut(s)	220, 226, 301, 591
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 138, 239, 269, 395, 425, 626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 615
Bse118I	RCCGGY	1 cut(s)	520
Bse21I	CCTNAGG	1 cut(s)	503
BseBI	CCWGG	2 cut(s)	228, 592
BseDI	CCNNGG	4 cut(s)	220, 226, 301, 591
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	227, 615
BseMII	CTCAG	2 cut(s)	229, 517
BseX3I	CGGCCG	2 cut(s)	522, 628
BseXI	GCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	4 cut(s)	402, 525, 582, 631
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	4 cut(s)	402, 525, 582, 631
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	61, 222, 521
BslI	CCNNNNNNNGG	2 cut(s)	227, 615
BsmAI	GTCTC	1 cut(s)	646
BsmBI	CGTCTC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	537, 547, 618
BspCNI	CTCAG	2 cut(s)	228, 516
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	6, 544
BspPI	GGATC	2 cut(s)	545, 626
BspT107I	GGYRCC	1 cut(s)	542
BsrBI	CCGCTC	3 cut(s)	211, 423, 455
BsrFI	RCCGGY	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	4 cut(s)	220, 226, 301, 591
BssMI	GATC	3 cut(s)	537, 547, 618
BssNI	GRCGYC	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	228, 592
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	361, 522
BstDEI	CTNAG	2 cut(s)	215, 503
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	2 cut(s)	359, 534
BstKTI	GATC	3 cut(s)	540, 550, 621
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	3 cut(s)	537, 547, 618
BstMCI	CGRYCG	4 cut(s)	402, 525, 582, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 49, 360, 482, 596
BstNI	CCWGG	2 cut(s)	228, 592
BstSCI	CCNGG	3 cut(s)	220, 226, 590
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	608
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BstZI	CGGCCG	2 cut(s)	522, 628
Bsu36I	CCTNAGG	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	2 cut(s)	361, 522
CfoI	GCGC	2 cut(s)	359, 534
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	224, 230, 588
CviAII	CATG	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	215, 503
DpnI	GATC	3 cut(s)	539, 549, 620
DpnII	GATC	3 cut(s)	537, 547, 618
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	4 cut(s)	424, 522, 600, 628
EagI	CGGCCG	2 cut(s)	522, 628
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
EciI	GGCGGA	5 cut(s)	27, 148, 266, 341, 460
EclXI	CGGCCG	2 cut(s)	522, 628
Eco47III	AGCGCT	1 cut(s)	533
Eco52I	CGGCCG	2 cut(s)	522, 628
Eco81I	CCTNAGG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	226, 590
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	1 cut(s)	385
FaiI	YATR	1 cut(s)	383
FatI	CATG	1 cut(s)	381
FauI	CCCGC	3 cut(s)	25, 216, 368
FblI	GTMKAC	2 cut(s)	369, 402
FokI	GGATG	1 cut(s)	21
FspBI	CTAG	2 cut(s)	435, 615
GlaI	GCGC	2 cut(s)	358, 533
GsuI	CTGGAG	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	535
HapII	CCGG	3 cut(s)	61, 222, 521
HhaI	GCGC	2 cut(s)	359, 534
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	357, 532
HinP1I	GCGC	2 cut(s)	357, 532
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HpaII	CCGG	3 cut(s)	61, 222, 521
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	370, 403
Hpy188I	TCNGA	2 cut(s)	170, 646
Hpy188III	TCNNGA	2 cut(s)	418, 551
Hpy8I	GTNNAC	2 cut(s)	370, 403
Hpy99I	CGWCG	5 cut(s)	188, 392, 452, 530, 650
HpyAV	CCTTC	2 cut(s)	130, 424
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	387, 648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 49, 360, 482, 596
HpyF3I	CTNAG	2 cut(s)	215, 503
HpySE526I	ACGT	2 cut(s)	387, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	357, 532
KroI	GCCGGC	1 cut(s)	520
KroNI	GCCGGC	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	537, 547, 618
LmnI	GCTCC	2 cut(s)	4, 216
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	435, 615
MaeII	ACGT	2 cut(s)	387, 648
MalI	GATC	3 cut(s)	539, 549, 620
MbiI	CCGCTC	3 cut(s)	211, 423, 455
MboI	GATC	3 cut(s)	537, 547, 618
MboII	GAAGA	3 cut(s)	169, 451, 643
MflI	RGATCY	1 cut(s)	618
MluCI	AATT	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	292
MroNI	GCCGGC	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	3 cut(s)	61, 222, 521
MspR9I	CCNGG	3 cut(s)	222, 228, 592
MvaI	CCWGG	2 cut(s)	228, 592
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	5 cut(s)	46, 49, 360, 482, 596
NaeI	GCCGGC	1 cut(s)	522
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	537, 547, 618
NgoMIV	GCCGGC	1 cut(s)	520
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	6, 544
NmeAIII	GCCGAG	2 cut(s)	282, 606
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	226, 590
PspGI	CCWGG	2 cut(s)	226, 590
PspN4I	GGNNCC	2 cut(s)	6, 544
PspPI	GGNCC	3 cut(s)	224, 230, 588
PsuI	RGATCY	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	537, 547, 618
Sau96I	GGNCC	3 cut(s)	224, 230, 588
ScrFI	CCNGG	3 cut(s)	222, 228, 592
SetI	ASST	7 cut(s)	90, 321, 390, 468, 504, 509, 651
SfaNI	GCATC	1 cut(s)	478
Sse9I	AATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	435, 615
StyD4I	CCNGG	3 cut(s)	220, 226, 590
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	390, 651
TaqI	TCGA	5 cut(s)	150, 315, 402, 509, 528
TaqII	GACCGA	2 cut(s)	388, 568
TasI	AATT	1 cut(s)	341
TscAI	CASTG	1 cut(s)	571
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	571
XapI	RAATTY	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	369, 402
XspI	CTAG	2 cut(s)	435, 615
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.