Rroxscaffold_3G00254350

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005864
Physical Location & Seq
Reverse (-)
48511658 .. 48515183
3526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254350.1

Sequence Viewer

Length: 699 bp
ATGGAGCCAACACCACCCGCCAAATCCACCACACCTCCGCCGCCGCCGCCGCCACTCCTCCGGCGATTAGTCGCAATAGACACCAAGCTCTCTCAGAAAATCCACATTCTCGCCAAACCCTTCCTGCCTCACTTCCTCCTCCTCCTCCTCGAACTCTCCGCCGACTTCCGATTATTCTTCCCCGTCGCCCTCTCCCTCCTCGCCGCCCCGCTCCTAAGCCCAGGCCCAAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCATTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAAGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGCCGCCCTCGCCGATGCTCTACTTCACCTCAGGTCGACGTCGCCGGCCGTCGAGCGCTGGATCGGTGCCGATCAAGACAAGGCCGTTAGTGTTCTGGTGTCGGTCGTTTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCTTCGCCGGAGCTTGTTTGGGCGTGGTTGAGGGTGCAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

232

Amino Acids

25.12

Weight (kDa)

10.09

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 94 - 229 4e-19 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 503, 636
AccB1I GGYRCC 1 cut(s) 527
AccBSI CCGCTC 3 cut(s) 211, 411, 443
AccI GTMKAC 3 cut(s) 357, 390, 497
AccII CGCG 1 cut(s) 345
AclWI GGATC 2 cut(s) 530, 611
AcoI YGGCCR 4 cut(s) 412, 507, 585, 613
AcsI RAATTY 1 cut(s) 329
AcyI GRCGYC 2 cut(s) 500, 633
AfeI AGCGCT 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 600
AjnI CCWGG 2 cut(s) 220, 575
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 88, 647, 677
AluI AGCT 3 cut(s) 88, 647, 677
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 2 cut(s) 530, 611
Ama87I CYCGRG 1 cut(s) 406
Aor51HI AGCGCT 1 cut(s) 518
AoxI GGCC 9 cut(s) 223, 292, 319, 412, 507, 543, 573, 585, 613
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 329
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspLEI GCGC 2 cut(s) 347, 519
AspS9I GGNCC 2 cut(s) 224, 573
AsuHPI GGTGA 2 cut(s) 325, 479
AvaI CYCGRG 1 cut(s) 406
AxyI CCTNAGG 1 cut(s) 491
BanI GGYRCC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 628
BbvI GCAGC 1 cut(s) 593
BccI CCATC 1 cut(s) 602
BceAI ACGGC 3 cut(s) 365, 494, 530
BciT130I CCWGG 2 cut(s) 222, 577
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 2 cut(s) 423, 600
BfoI RGCGCY 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 222, 577
BmeT110I CYCGRG 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 224, 573
BmiI GGNNCC 2 cut(s) 6, 529
BmrFI CCNGG 2 cut(s) 222, 577
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 500, 633
BsaJI CCNNGG 3 cut(s) 220, 289, 576
BsaXI ACNNNNNCTCC 8 cut(s) 19, 49, 227, 257, 383, 413, 611, 641
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 1 cut(s) 505
Bse21I CCTNAGG 1 cut(s) 491
BseBI CCWGG 2 cut(s) 222, 577
BseDI CCNNGG 3 cut(s) 220, 289, 576
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMII CTCAG 2 cut(s) 107, 505
BseX3I CGGCCG 2 cut(s) 507, 613
BseXI GCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 4 cut(s) 390, 510, 567, 616
BshFI GGCC 9 cut(s) 225, 294, 321, 414, 509, 545, 575, 587, 615
BshNI GGYRCC 1 cut(s) 527
BsiEI CGRYCG 4 cut(s) 390, 510, 567, 616
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 3 cut(s) 61, 506, 642
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 1 cut(s) 631
BsmBI CGTCTC 1 cut(s) 631
BsnI GGCC 9 cut(s) 225, 294, 321, 414, 509, 545, 575, 587, 615
BsoBI CYCGRG 1 cut(s) 406
Bsp143I GATC 3 cut(s) 522, 532, 603
BspANI GGCC 9 cut(s) 225, 294, 321, 414, 509, 545, 575, 587, 615
BspCNI CTCAG 2 cut(s) 106, 504
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 6, 529
BspPI GGATC 2 cut(s) 530, 611
BspT107I GGYRCC 1 cut(s) 527
BsrBI CCGCTC 3 cut(s) 211, 411, 443
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 3 cut(s) 220, 289, 576
BssMI GATC 3 cut(s) 522, 532, 603
BssNI GRCGYC 2 cut(s) 500, 633
Bst2UI CCWGG 2 cut(s) 222, 577
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 2 cut(s) 500, 633
BstC8I GCNNGC 2 cut(s) 349, 507
BstDEI CTNAG 4 cut(s) 93, 215, 491, 689
BstFNI CGCG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 520
BstHHI GCGC 2 cut(s) 347, 519
BstKTI GATC 3 cut(s) 525, 535, 606
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 3 cut(s) 522, 532, 603
BstMCI CGRYCG 4 cut(s) 390, 510, 567, 616
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 348, 470, 581
BstNI CCWGG 2 cut(s) 222, 577
BstSCI CCNGG 2 cut(s) 220, 575
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BstZI CGGCCG 2 cut(s) 507, 613
Bsu36I CCTNAGG 1 cut(s) 491
BsuRI GGCC 9 cut(s) 225, 294, 321, 414, 509, 545, 575, 587, 615
Cac8I GCNNGC 2 cut(s) 349, 507
CfoI GCGC 2 cut(s) 347, 519
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 224, 573
CviAII CATG 1 cut(s) 370
DdeI CTNAG 4 cut(s) 93, 215, 491, 689
DpnI GATC 3 cut(s) 524, 534, 605
DpnII GATC 3 cut(s) 522, 532, 603
EaeI YGGCCR 4 cut(s) 412, 507, 585, 613
EagI CGGCCG 2 cut(s) 507, 613
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 5 cut(s) 27, 148, 254, 329, 448
EclXI CGGCCG 2 cut(s) 507, 613
Eco47III AGCGCT 1 cut(s) 518
Eco52I CGGCCG 2 cut(s) 507, 613
Eco81I CCTNAGG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 406
EcoRII CCWGG 2 cut(s) 220, 575
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 1 cut(s) 373
FaiI YATR 1 cut(s) 371
FatI CATG 1 cut(s) 369
FauI CCCGC 3 cut(s) 25, 216, 356
FblI GTMKAC 3 cut(s) 357, 390, 497
FspBI CTAG 2 cut(s) 423, 600
GlaI GCGC 2 cut(s) 346, 518
GsuI CTGGAG 1 cut(s) 229
HaeII RGCGCY 1 cut(s) 520
HaeIII GGCC 9 cut(s) 225, 294, 321, 414, 509, 545, 575, 587, 615
HapII CCGG 3 cut(s) 61, 506, 642
HhaI GCGC 2 cut(s) 347, 519
Hin1I GRCGYC 2 cut(s) 500, 633
Hin1II CATG 1 cut(s) 373
Hin6I GCGC 2 cut(s) 345, 517
HinP1I GCGC 2 cut(s) 345, 517
HincII GTYRAC 2 cut(s) 391, 498
HindII GTYRAC 2 cut(s) 391, 498
HpaII CCGG 3 cut(s) 61, 506, 642
HphI GGTGA 2 cut(s) 325, 479
Hpy166II GTNNAC 3 cut(s) 358, 391, 498
Hpy188I TCNGA 4 cut(s) 96, 170, 631, 692
Hpy188III TCNNGA 2 cut(s) 406, 536
Hpy8I GTNNAC 3 cut(s) 358, 391, 498
Hpy99I CGWCG 7 cut(s) 188, 380, 440, 502, 505, 515, 635
HpyAV CCTTC 2 cut(s) 130, 412
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 3 cut(s) 375, 500, 633
HpyCH4V TGCA 1 cut(s) 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 348, 470, 581
HpyF3I CTNAG 4 cut(s) 93, 215, 491, 689
HpySE526I ACGT 3 cut(s) 375, 500, 633
Hsp92I GRCGYC 2 cut(s) 500, 633
Hsp92II CATG 1 cut(s) 373
HspAI GCGC 2 cut(s) 345, 517
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 522, 532, 603
LmnI GCTCC 3 cut(s) 4, 216, 644
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 423, 600
MaeII ACGT 3 cut(s) 375, 500, 633
MalI GATC 3 cut(s) 524, 534, 605
MbiI CCGCTC 3 cut(s) 211, 411, 443
MboI GATC 3 cut(s) 522, 532, 603
MboII GAAGA 3 cut(s) 169, 439, 628
MflI RGATCY 1 cut(s) 603
MluCI AATT 1 cut(s) 329
MmeI TCCRAC 2 cut(s) 280, 654
MroNI GCCGGC 1 cut(s) 505
MseI TTAA 1 cut(s) 697
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 3 cut(s) 61, 506, 642
MspR9I CCNGG 2 cut(s) 222, 577
MvaI CCWGG 2 cut(s) 222, 577
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 348, 470, 581
NaeI GCCGGC 1 cut(s) 507
NdeII GATC 3 cut(s) 522, 532, 603
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 1 cut(s) 373
NlaIV GGNNCC 2 cut(s) 6, 529
NmeAIII GCCGAG 2 cut(s) 270, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 220, 575
PspGI CCWGG 2 cut(s) 220, 575
PspN4I GGNNCC 2 cut(s) 6, 529
PspPI GGNCC 2 cut(s) 224, 573
PsuI RGATCY 1 cut(s) 603
SalI GTCGAC 2 cut(s) 389, 496
SaqAI TTAA 1 cut(s) 697
Sau3AI GATC 3 cut(s) 522, 532, 603
Sau96I GGNCC 2 cut(s) 224, 573
ScrFI CCNGG 2 cut(s) 222, 577
SfaNI GCATC 1 cut(s) 466
Sse9I AATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 423, 600
StyD4I CCNGG 2 cut(s) 220, 575
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 3 cut(s) 378, 503, 636
TaqI TCGA 5 cut(s) 150, 303, 390, 497, 513
TaqII GACCGA 2 cut(s) 376, 553
TasI AATT 1 cut(s) 329
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 386, 671
XapI RAATTY 1 cut(s) 329
XmiI GTMKAC 3 cut(s) 357, 390, 497
XspI CTAG 2 cut(s) 423, 600
ZraI GACGTC 2 cut(s) 501, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.