Rorug07G0072300

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005864
Physical Location & Seq
Forward (+)
5542440 .. 5542928
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0072300.1

Sequence Viewer

Length: 489 bp
ATGGGAAGTAAAGTTGATTGCATTAGTGTCTTTTCGGTTATTTTTAGGATTTTCTTTGTTGGTTTTTTAGGTCTGATAATAAGTCCCTACTCACTTGAGCTAGGGTTTGGGAGTCTTGTTCTTGCTGTGCCATTTTTATGGTGTTCTCCTCGAGGACTATTTGTTAAATTGTCGGTGCTTTCTGGTTATCAATGTGATGGTGAGTTGCCCTTGCACGTGGTCTGGTTTTGGGACACGGTGTTGAAGAGGGTGAAGAAGTTCGTCTTGATGTTGGTGGCGAGGTCGTATCGTGATACTCGGGATTGGTTAACTTCTATTGTAGCCCGCAATTATGGGCGTAAAACTTGGTTAGGGGTTGGGCTCTTTCGGCTCATGGATGTCTCTTATAGGGATGGACCCGTAGCTAGTGATCATGGTGGGAATATGTGTTGCGGTATTATACCCCAACTGGTTGTTATTCCAATGCGTTGTAATCTTTTCGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

9.3

Isoelectric Point (pI)

16.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 150
AciI CCGC 2 cut(s) 325, 432
AcvI CACGTG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 2 cut(s) 100, 404
AluI AGCT 2 cut(s) 100, 404
Alw26I GTCTC 1 cut(s) 385
Ama87I CYCGRG 2 cut(s) 150, 297
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 212, 262
AvaI CYCGRG 2 cut(s) 150, 297
AvaII GGWCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 217
BccI CCATC 2 cut(s) 191, 386
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 101, 405
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 2 cut(s) 150, 297
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 382, 397
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 150, 297
BslFI GGGAC 2 cut(s) 69, 245
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 69, 245
BsoBI CYCGRG 2 cut(s) 150, 297
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 2 cut(s) 325, 432
BspLI GGNNCC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 453
BssMI GATC 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 325
BstF5I GGATG 2 cut(s) 382, 397
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstXI CCANNNNNNTGG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 382, 397
Cac8I GCNNGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 395
CviAII CATG 2 cut(s) 373, 413
CviJI RGCY 5 cut(s) 100, 323, 361, 370, 404
CviKI_1 RGCY 5 cut(s) 100, 323, 361, 370, 404
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 395
Eco72I CACGTG 1 cut(s) 217
Eco88I CYCGRG 2 cut(s) 150, 297
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 2 cut(s) 376, 416
FaiI YATR 7 cut(s) 139, 333, 374, 387, 414, 425, 440
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 2 cut(s) 69, 245
FatI CATG 2 cut(s) 372, 412
FauI CCCGC 1 cut(s) 332
FbaI TGATCA 1 cut(s) 409
FokI GGATG 2 cut(s) 389, 404
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 2 cut(s) 101, 405
Hin1II CATG 2 cut(s) 376, 416
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 112
HpaI GTTAAC 1 cut(s) 309
HphI GGTGA 2 cut(s) 212, 262
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 265, 290, 299
Hpy8I GTNNAC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 21, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 2 cut(s) 376, 416
Ksp22I TGATCA 1 cut(s) 409
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 1 cut(s) 409
LpnPI CCDG 3 cut(s) 168, 208, 434
MaeI CTAG 2 cut(s) 101, 405
MaeII ACGT 1 cut(s) 216
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 256, 265
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 167, 328
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 4 cut(s) 146, 159, 240, 273
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 165, 308, 487
MslI CAYNNNNRTG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 1 cut(s) 409
NlaIII CATG 2 cut(s) 376, 416
NlaIV GGNNCC 1 cut(s) 397
PaeR7I CTCGAG 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 120
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 217
PspCI CACGTG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 165, 308, 487
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 363
SetI ASST 5 cut(s) 73, 102, 219, 284, 406
Sfr274I CTCGAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 95, 150
SmoI CTYRAG 2 cut(s) 95, 150
Sse9I AATT 2 cut(s) 167, 328
SsiI CCGC 2 cut(s) 325, 432
SspMI CTAG 2 cut(s) 101, 405
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 167, 328
Tru1I TTAA 3 cut(s) 165, 308, 487
Tru9I TTAA 3 cut(s) 165, 308, 487
VpaK11BI GGWCC 1 cut(s) 395
XhoI CTCGAG 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 101, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.