Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005864

Physical Location & Seq

Genomic Coordinates Reverse (-)

8806058 .. 8812116

Gene Structure 6059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G073800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACTGACACTACAGCAATGGAGCCATCGCCACCACCCAAATCCAAGAGCACCACCAAACCGCCACAGCCACCGCCGCGGCCGCCACTCCACCGCCGCTTAGTAACTCTCGACACGACGCTCTCCCAACGTCTCCATGTCCTCGCCAAACCTTTCCTTCCCCACTTCATCCTCCTCCTCCTCGAAATCTCCGCCGACTTCCGCTTCTTCTTTCCCCTCTCCCTCTCCCTCCTCCTCGCCCCAACCCTAACCCTAACCCCATCCCCAATCCAAATCCCAGGCCCAGGCGCAAGCCTAAGCCCAATTCAAATCCTCCGCCCTCTCCTCTCCCCGCTCATCCTCGGCCTCCTCCTCGACCTCGCCCTCATCGGCCTAATCAAGCTCCTCTTCCGCCGCGCCCGCCCTCTCTACAACAAGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCCAGCGGACACGCCTCCAGGGTCTGCTTCGTCGCCGCCCTTCTCCACCTCTCCGCCGCAGCTCTCGCCGATGCCCTCGCGCTCCTCCGGCCAACGTCTCCGTTCATTGACCGCTGGATCGGCGCGGACCCCGTCAGCGCCATTAGTGTTTTGGTCTTGGTTGCTTGGACCTGGGCCTACGCCACCTCCTTCTCTAGGATTGTGCTGGGCAGGCATTTCGTCACCGACGTTTGCGCTGGGGCGTGTTTGGGCATGTTTGAGGGTCTCGTTGCGTTTCGCTTCCTCAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2

Protein Analysis

250

Amino Acids

27.22

Weight (kDa)

10.4

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22550
fragaria_vesca	FvH4_5g00170 FvH4_5g00170 FvH4_5g00170
malus_domestica	MD04G1086000.v1.1 MD06G1062400.v1.1
prunus_persica	Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1
pyrus_communis	pycom06g06130
rosa_chinensis	RchiOBHm_Chr7g0202701
rosa_laevigata	RLG00000003577
rosa_multiflora	Rmu_sc0002158.1_g000005 Rmu_sc0002158.1_g000006 Rmu_sc0002158.1_g000007
rosa_roxburghii	Rroxscaffold_3G00254350
rosa_rugosa	Rorug07G0072200 Rorug07G0072200 Rorug07G0072300 Rorug07G0072400 Rorug07G0072500 Rorug07G0072600
rosa_samantha	Rh7AG200100 Rh7BG200700 Rh7CG211500 Rh7DG207000
rosa_wichuraiana	Rw7G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	4 cut(s)	79, 396, 536, 581
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	2 cut(s)	80, 545
AfiI	CCNNNNNNNGG	2 cut(s)	284, 651
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	4 cut(s)	277, 283, 473, 626
AluBI	AGCT	2 cut(s)	382, 518
AluI	AGCT	2 cut(s)	382, 518
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	3 cut(s)	137, 558, 725
AlwI	GGATC	1 cut(s)	581
AlwNI	CAGNNNCTG	1 cut(s)	480
AoxI	GGCC	6 cut(s)	80, 280, 343, 370, 545, 630
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	6 cut(s)	290, 398, 538, 581, 596, 692
AspS9I	GGNCC	4 cut(s)	281, 583, 624, 630
AsuHPI	GGTGA	1 cut(s)	670
AvaII	GGWCC	2 cut(s)	583, 624
AxyI	CCTNAGG	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	34, 268
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	655, 689
BciT130I	CCWGG	4 cut(s)	279, 285, 475, 628
BcoDI	GTCTC	3 cut(s)	137, 558, 725
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	597
BisI	GCNGC	8 cut(s)	77, 80, 83, 97, 394, 492, 513, 516
BlsI	GCNGC	8 cut(s)	78, 81, 84, 98, 395, 493, 514, 517
Bme1390I	CCNGG	4 cut(s)	279, 285, 475, 628
Bme18I	GGWCC	2 cut(s)	583, 624
BmgT120I	GGNCC	4 cut(s)	281, 583, 624, 630
BmiI	GGNNCC	2 cut(s)	24, 585
BmrFI	CCNGG	4 cut(s)	279, 285, 475, 628
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	6 cut(s)	77, 277, 283, 340, 474, 627
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 651
Bse21I	CCTNAGG	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	4 cut(s)	279, 285, 475, 628
BseDI	CCNNGG	6 cut(s)	77, 277, 283, 340, 474, 627
BseGI	GGATG	3 cut(s)	168, 260, 336
BseLI	CCNNNNNNNGG	2 cut(s)	284, 651
BseMI	GCAATG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	527
BseYI	CCCAGC	3 cut(s)	458, 661, 692
Bsh1236I	CGCG	4 cut(s)	79, 396, 536, 581
Bsh1285I	CGRYCG	2 cut(s)	83, 441
BshFI	GGCC	6 cut(s)	82, 282, 345, 372, 547, 632
BsiEI	CGRYCG	2 cut(s)	83, 441
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	284, 651
BsmAI	GTCTC	3 cut(s)	137, 558, 725
BsmBI	CGTCTC	2 cut(s)	137, 558
BsnI	GGCC	6 cut(s)	82, 282, 345, 372, 547, 632
Bso31I	GGTCTC	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	573
BspANI	GGCC	6 cut(s)	82, 282, 345, 372, 547, 632
BspFNI	CGCG	4 cut(s)	79, 396, 536, 581
BspLI	GGNNCC	2 cut(s)	24, 585
BspPI	GGATC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	725
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	6 cut(s)	77, 277, 283, 340, 474, 627
BssMI	GATC	1 cut(s)	573
Bst2UI	CCWGG	4 cut(s)	279, 285, 475, 628
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	292, 400, 668
BstDEI	CTNAG	3 cut(s)	100, 296, 740
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	168, 260, 336
BstFNI	CGCG	4 cut(s)	79, 396, 536, 581
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	6 cut(s)	290, 398, 538, 581, 596, 692
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	3 cut(s)	137, 558, 725
BstMBI	GATC	1 cut(s)	573
BstMCI	CGRYCG	2 cut(s)	83, 441
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 82, 399, 521, 544, 576, 667
BstNI	CCWGG	4 cut(s)	279, 285, 475, 628
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	4 cut(s)	277, 283, 473, 626
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	4 cut(s)	79, 396, 536, 581
BstV1I	GCAGC	1 cut(s)	527
BstZI	CGGCCG	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	740
BsuRI	GGCC	6 cut(s)	82, 282, 345, 372, 547, 632
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	168, 260, 336
Cac8I	GCNNGC	3 cut(s)	292, 400, 668
CaiI	CAGNNNCTG	1 cut(s)	480
CciNI	GCGGCCGC	1 cut(s)	80
CfoI	GCGC	6 cut(s)	290, 398, 538, 581, 596, 692
Cfr13I	GGNCC	4 cut(s)	281, 583, 624, 630
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	127
CviAII	CATG	3 cut(s)	137, 421, 709
DdeI	CTNAG	3 cut(s)	100, 296, 740
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
EaeI	YGGCCR	2 cut(s)	80, 545
EagI	CGGCCG	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	4 cut(s)	181, 305, 380, 499
EclXI	CGGCCG	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	583, 624
Eco52I	CGGCCG	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	649
EcoRII	CCWGG	4 cut(s)	277, 283, 473, 626
Esp3I	CGTCTC	2 cut(s)	137, 558
FaeI	CATG	3 cut(s)	140, 424, 712
FaiI	YATR	3 cut(s)	138, 422, 710
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	3 cut(s)	136, 420, 708
FauI	CCCGC	2 cut(s)	339, 407
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	8 cut(s)	77, 80, 83, 97, 394, 492, 513, 516
FokI	GGATG	3 cut(s)	155, 247, 323
Fsp4HI	GCNGC	8 cut(s)	77, 80, 83, 97, 394, 492, 513, 516
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	6 cut(s)	289, 397, 537, 580, 595, 691
GluI	GCNGC	8 cut(s)	77, 80, 83, 97, 394, 492, 513, 516
GsaI	CCCAGC	3 cut(s)	462, 665, 696
GsuI	CTGGAG	1 cut(s)	457
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	6 cut(s)	82, 282, 345, 372, 547, 632
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	6 cut(s)	290, 398, 538, 581, 596, 692
Hin1II	CATG	3 cut(s)	140, 424, 712
Hin6I	GCGC	6 cut(s)	288, 396, 536, 579, 594, 690
HinP1I	GCGC	6 cut(s)	288, 396, 536, 579, 594, 690
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	4 cut(s)	121, 431, 491, 686
HpyAV	CCTTC	4 cut(s)	167, 463, 506, 655
HpyCH4IV	ACGT	4 cut(s)	130, 426, 551, 684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 82, 399, 521, 544, 576, 667
HpyF3I	CTNAG	3 cut(s)	100, 296, 740
HpySE526I	ACGT	4 cut(s)	130, 426, 551, 684
Hsp92II	CATG	3 cut(s)	140, 424, 712
HspAI	GCGC	6 cut(s)	288, 396, 536, 579, 594, 690
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	22, 387, 543
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	4 cut(s)	130, 426, 551, 684
MaeIII	GTNAC	2 cut(s)	103, 676
MalI	GATC	1 cut(s)	575
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	1 cut(s)	573
MboII	GAAGA	2 cut(s)	199, 379
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	303
MseI	TTAA	1 cut(s)	748
MspA1I	CMGCKG	3 cut(s)	79, 462, 570
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	4 cut(s)	279, 285, 475, 628
MvaI	CCWGG	4 cut(s)	279, 285, 475, 628
MvnI	CGCG	4 cut(s)	79, 396, 536, 581
MwoI	GCNNNNNNNGC	7 cut(s)	76, 82, 399, 521, 544, 576, 667
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	3 cut(s)	140, 424, 712
NlaIV	GGNNCC	2 cut(s)	24, 585
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	676
NotI	GCGGCCGC	1 cut(s)	80
NspI	RCATGY	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	681
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	8 cut(s)	78, 81, 84, 98, 395, 493, 514, 517
Psp6I	CCWGG	4 cut(s)	277, 283, 473, 626
PspFI	CCCAGC	3 cut(s)	458, 661, 692
PspGI	CCWGG	4 cut(s)	277, 283, 473, 626
PspN4I	GGNNCC	2 cut(s)	24, 585
PspPI	GGNCC	4 cut(s)	281, 583, 624, 630
PstNI	CAGNNNCTG	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	587
SacII	CCGCGG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	8 cut(s)	77, 80, 83, 97, 394, 492, 513, 516
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	4 cut(s)	281, 583, 624, 630
ScrFI	CCNGG	4 cut(s)	279, 285, 475, 628
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	12
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	583, 624
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	4 cut(s)	277, 283, 473, 626
TaiI	ACGT	4 cut(s)	133, 429, 554, 687
TaqI	TCGA	4 cut(s)	111, 183, 354, 441
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	1 cut(s)	303
TauI	GCSGC	7 cut(s)	79, 82, 85, 99, 396, 494, 515
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	157, 437, 550
TspGWI	ACGGA	1 cut(s)	546
Tth111I	GACNNNGTC	1 cut(s)	587
VpaK11BI	GGWCC	2 cut(s)	583, 624
XagI	CCTNNNNNAGG	1 cut(s)	649
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.