Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005864

Physical Location & Seq

Genomic Coordinates Reverse (-)

119545 .. 123192

Gene Structure 3648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00170.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACCCAACACCACCCGCCAAAACCACCGCAGCTCCGCCGCCACTCCTCCGCCGATTAGTCGCAATAGACACCAAGATCTCTCAAGAAATCCACATTCTCGCCAAACCCTTCCTACCTCACTCCCTCCTCCTCCTCCTCGAAATCTCCGCCGACTTCCGATTATTCTTCCCCGTCGCGCTCTCCCTTCTCCTCGCCCCGCTCCTAAGCCCGAACCCGAACCCGAACTCCGGCCCAATCCAACTCCTCCGCCCCTTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTCATCGGCCTCATCAAATTCATCGTTCGCCGCGCCCGCCCCGTCTACAACAAGAACATGACCGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCCAGCGGACACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGCCGCTCTCACCGACGCTCTTGTCTACTTCAGGTCGACGTCGCCGGCCATCGAGCGATGGATCGGTGCGGAAGTCAAGGCCGTGAGTGTTCTGGTCTCGGTCGTCTGGGCCTGGGCAGCGGCCACCTCGATCTCTAGGATCTTGCTCGGCCGGCACTTTGTCTTCGACGTCTTCGCCGGAGCTTGCTTGGGCGTGCTTGAGGGTGTAGTAGCCTTCCATTTCCTCAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP2

Protein Analysis

227

Amino Acids

24.63

Weight (kDa)

9.92

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	89 - 223	5.5e-18	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22550
fragaria_vesca	FvH4_5g00170 FvH4_5g00170 FvH4_5g00170
malus_domestica	MD04G1086000.v1.1 MD06G1062400.v1.1
prunus_persica	Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1 Prupe.5G073800_v2.0.a1
pyrus_communis	pycom06g06130
rosa_chinensis	RchiOBHm_Chr7g0202701
rosa_laevigata	RLG00000003577
rosa_multiflora	Rmu_sc0002158.1_g000005 Rmu_sc0002158.1_g000006 Rmu_sc0002158.1_g000007
rosa_roxburghii	Rroxscaffold_3G00254350
rosa_rugosa	Rorug07G0072200 Rorug07G0072200 Rorug07G0072300 Rorug07G0072400 Rorug07G0072500 Rorug07G0072600
rosa_samantha	Rh7AG200100 Rh7BG200700 Rh7CG211500 Rh7DG207000
rosa_wichuraiana	Rw7G017510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AatII	GACGTC	2 cut(s)	488, 618
AccBSI	CCGCTC	3 cut(s)	202, 428, 452
AccI	GTMKAC	4 cut(s)	342, 375, 471, 482
AccII	CGCG	2 cut(s)	179, 330
AclWI	GGATC	2 cut(s)	515, 593
AcoI	YGGCCR	3 cut(s)	492, 567, 595
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	460
AcyI	GRCGYC	2 cut(s)	485, 615
AfiI	CCNNNNNNNGG	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	557
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	35, 629
AluI	AGCT	2 cut(s)	35, 629
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	2 cut(s)	515, 593
AoxI	GGCC	8 cut(s)	232, 277, 304, 492, 525, 555, 567, 595
ApeKI	GCWGC	2 cut(s)	32, 563
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	181, 332
AspS9I	GGNCC	3 cut(s)	4, 233, 555
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	601, 610
BbvI	GCAGC	2 cut(s)	44, 575
BccI	CCATC	2 cut(s)	498, 503
BceAI	ACGGC	2 cut(s)	350, 512
BciT130I	CCWGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	408, 582
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	8 cut(s)	33, 41, 328, 426, 447, 450, 564, 567
BlsI	GCNGC	8 cut(s)	34, 42, 329, 427, 448, 451, 565, 568
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 233, 555
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	559
BpiI	GAAGAC	2 cut(s)	601, 610
Bpu10I	CCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	2 cut(s)	69, 665
BsaHI	GRCGYC	2 cut(s)	485, 615
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	274, 558
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 212, 242, 368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	2 cut(s)	490, 597
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	274, 558
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	44, 575
BseYI	CCCAGC	1 cut(s)	392
Bsh1236I	CGCG	2 cut(s)	179, 330
Bsh1285I	CGRYCG	3 cut(s)	375, 549, 598
BshFI	GGCC	8 cut(s)	234, 279, 306, 494, 527, 557, 569, 597
BsiEI	CGRYCG	3 cut(s)	375, 549, 598
BsiSI	CCGG	4 cut(s)	231, 491, 598, 624
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	547
BsnI	GGCC	8 cut(s)	234, 279, 306, 494, 527, 557, 569, 597
Bso31I	GGTCTC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	78, 507, 576, 585
BspANI	GGCC	8 cut(s)	234, 279, 306, 494, 527, 557, 569, 597
BspFNI	CGCG	2 cut(s)	179, 330
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	515, 593
BspTNI	GGTCTC	1 cut(s)	547
BsrBI	CCGCTC	3 cut(s)	202, 428, 452
BsrFI	RCCGGY	2 cut(s)	490, 597
BssAI	RCCGGY	2 cut(s)	490, 597
BssECI	CCNNGG	2 cut(s)	274, 558
BssMI	GATC	4 cut(s)	78, 507, 576, 585
BssNI	GRCGYC	2 cut(s)	485, 615
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	437
BstACI	GRCGYC	2 cut(s)	485, 615
BstC8I	GCNNGC	5 cut(s)	334, 492, 599, 631, 641
BstDEI	CTNAG	2 cut(s)	206, 671
BstFNI	CGCG	2 cut(s)	179, 330
BstHHI	GCGC	2 cut(s)	181, 332
BstKTI	GATC	4 cut(s)	81, 510, 579, 588
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	4 cut(s)	78, 507, 576, 585
BstMCI	CGRYCG	3 cut(s)	375, 549, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 563, 598
BstNI	CCWGG	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	557
BstUI	CGCG	2 cut(s)	179, 330
BstV1I	GCAGC	2 cut(s)	44, 575
BstV2I	GAAGAC	2 cut(s)	601, 610
BstX2I	RGATCY	2 cut(s)	78, 585
BstYI	RGATCY	2 cut(s)	78, 585
BstZI	CGGCCG	1 cut(s)	595
BsuRI	GGCC	8 cut(s)	234, 279, 306, 494, 527, 557, 569, 597
BtgZI	GCGATG	1 cut(s)	517
Cac8I	GCNNGC	5 cut(s)	334, 492, 599, 631, 641
CfoI	GCGC	2 cut(s)	181, 332
Cfr10I	RCCGGY	2 cut(s)	490, 597
Cfr13I	GGNCC	3 cut(s)	4, 233, 555
CseI	GACGC	1 cut(s)	470
CviAII	CATG	1 cut(s)	355
DdeI	CTNAG	2 cut(s)	206, 671
DpnI	GATC	4 cut(s)	80, 509, 578, 587
DpnII	GATC	4 cut(s)	78, 507, 576, 585
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	3 cut(s)	492, 567, 595
EagI	CGGCCG	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	5 cut(s)	27, 41, 139, 239, 433
EclXI	CGGCCG	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	557
FaeI	CATG	1 cut(s)	358
FaiI	YATR	1 cut(s)	356
FatI	CATG	1 cut(s)	354
FauI	CCCGC	3 cut(s)	25, 207, 341
FblI	GTMKAC	4 cut(s)	342, 375, 471, 482
Fnu4HI	GCNGC	8 cut(s)	33, 41, 328, 426, 447, 450, 564, 567
Fsp4HI	GCNGC	8 cut(s)	33, 41, 328, 426, 447, 450, 564, 567
FspBI	CTAG	2 cut(s)	408, 582
GlaI	GCGC	2 cut(s)	180, 331
GluI	GCNGC	8 cut(s)	33, 41, 328, 426, 447, 450, 564, 567
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	8 cut(s)	234, 279, 306, 494, 527, 557, 569, 597
HapII	CCGG	4 cut(s)	231, 491, 598, 624
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	181, 332
Hin1I	GRCGYC	2 cut(s)	485, 615
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	179, 330
HinP1I	GCGC	2 cut(s)	179, 330
HincII	GTYRAC	2 cut(s)	376, 483
HindII	GTYRAC	2 cut(s)	376, 483
HpaII	CCGG	4 cut(s)	231, 491, 598, 624
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	4 cut(s)	343, 376, 472, 483
Hpy188I	TCNGA	2 cut(s)	161, 674
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	4 cut(s)	343, 376, 472, 483
Hpy99I	CGWCG	7 cut(s)	179, 365, 425, 464, 487, 490, 617
HpyAV	CCTTC	5 cut(s)	121, 197, 265, 397, 670
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	485, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 563, 598
HpyF3I	CTNAG	2 cut(s)	206, 671
HpySE526I	ACGT	2 cut(s)	485, 615
Hsp92I	GRCGYC	2 cut(s)	485, 615
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	179, 330
KroI	GCCGGC	2 cut(s)	490, 597
KroNI	GCCGGC	2 cut(s)	492, 599
Kzo9I	GATC	4 cut(s)	78, 507, 576, 585
LmnI	GCTCC	3 cut(s)	40, 207, 626
Lsp1109I	GCAGC	2 cut(s)	44, 575
MaeI	CTAG	2 cut(s)	408, 582
MaeII	ACGT	2 cut(s)	485, 615
MalI	GATC	4 cut(s)	80, 509, 578, 587
MbiI	CCGCTC	3 cut(s)	202, 428, 452
MboI	GATC	4 cut(s)	78, 507, 576, 585
MboII	GAAGA	4 cut(s)	160, 424, 601, 610
MflI	RGATCY	2 cut(s)	78, 585
MluCI	AATT	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	265
MroNI	GCCGGC	2 cut(s)	490, 597
MseI	TTAA	1 cut(s)	679
MspA1I	CMGCKG	2 cut(s)	396, 566
MspI	CCGG	4 cut(s)	231, 491, 598, 624
MspR9I	CCNGG	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	559
MvnI	CGCG	2 cut(s)	179, 330
MwoI	GCNNNNNNNGC	3 cut(s)	333, 563, 598
NaeI	GCCGGC	2 cut(s)	492, 599
NdeII	GATC	4 cut(s)	78, 507, 576, 585
NgoMIV	GCCGGC	2 cut(s)	490, 597
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	255, 573
PdiI	GCCGGC	2 cut(s)	492, 599
PkrI	GCNGC	8 cut(s)	34, 42, 329, 427, 448, 451, 565, 568
Psp6I	CCWGG	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	4, 233, 555
PsuI	RGATCY	2 cut(s)	78, 585
SalI	GTCGAC	2 cut(s)	374, 481
SaqAI	TTAA	1 cut(s)	679
SatI	GCNGC	8 cut(s)	33, 41, 328, 426, 447, 450, 564, 567
Sau3AI	GATC	4 cut(s)	78, 507, 576, 585
Sau96I	GGNCC	3 cut(s)	4, 233, 555
ScrFI	CCNGG	1 cut(s)	559
SetI	ASST	9 cut(s)	37, 121, 294, 441, 482, 488, 575, 618, 631
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	84, 644
SmoI	CTYRAG	2 cut(s)	84, 644
Sse9I	AATT	1 cut(s)	314
SspMI	CTAG	2 cut(s)	408, 582
StyD4I	CCNGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	488, 618
TaqI	TCGA	7 cut(s)	141, 288, 375, 482, 498, 575, 612
TaqII	GACCGA	2 cut(s)	361, 535
TasI	AATT	1 cut(s)	314
TauI	GCSGC	6 cut(s)	43, 330, 428, 449, 452, 569
Tru1I	TTAA	1 cut(s)	679
Tru9I	TTAA	1 cut(s)	679
TseI	GCWGC	2 cut(s)	32, 563
TspDTI	ATGAA	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	314
XmiI	GTMKAC	4 cut(s)	342, 375, 471, 482
XspI	CTAG	2 cut(s)	408, 582
ZraI	GACGTC	2 cut(s)	486, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.