Rh7DG207000

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005864
Physical Location & Seq
Forward (+)
19680750 .. 19685030
4281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG207000.1

Sequence Viewer

Length: 717 bp
ATGGAGCCAACACCACCCGCCAAATCCACCACACATCCGCCGCCGCCGCCGCCGTCACTCCTCCGGCGATTAGTCGCAATAGACACCAAGCTCTCTCAACACATCCACATTCTCGCCAAACCCTTCCTCCCTCACTTCGTCCTCCTCCTCCTCGAACTCTCGGCCGACTTCCGATTATTCTTCCCCGTCGCCCTCTCCCTCCTCCTCGCCCCGCTCCTCAGCCCCGGCCCAGGCCCAGGCCCAAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCCTTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAAGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGCCGCCCTCGCCGATGCTCTACTCCACCTGAGGTCGTCGTCGCCGCCGGCCGTCGAGCGCTGGATCGGTGCCGATCAAGACAAGGCCGTTAGTGTTCTGGTGTCGGTCGTTTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCGTCGCCGGAGCTTGTTTGGGCGTGGTTGAGGGTGCAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

238

Amino Acids

25.62

Weight (kDa)

10.01

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 99 - 235 2e-19 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 654
AccB1I GGYRCC 1 cut(s) 545
AccBSI CCGCTC 3 cut(s) 214, 426, 458
AccI GTMKAC 2 cut(s) 372, 405
AccII CGCG 1 cut(s) 360
AclWI GGATC 2 cut(s) 548, 629
AcoI YGGCCR 5 cut(s) 162, 427, 525, 603, 631
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 651
AfeI AGCGCT 1 cut(s) 536
AfiI CCNNNNNNNGG 3 cut(s) 230, 236, 618
AjnI CCWGG 3 cut(s) 229, 235, 593
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 3 cut(s) 91, 665, 695
AluI AGCT 3 cut(s) 91, 665, 695
Alw26I GTCTC 1 cut(s) 649
AlwI GGATC 2 cut(s) 548, 629
Ama87I CYCGRG 1 cut(s) 421
Aor51HI AGCGCT 1 cut(s) 536
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 2 cut(s) 362, 537
AspS9I GGNCC 4 cut(s) 227, 233, 239, 591
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 421
AxyI CCTNAGG 1 cut(s) 506
BanI GGYRCC 1 cut(s) 545
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 611
BccI CCATC 1 cut(s) 620
BceAI ACGGC 4 cut(s) 37, 380, 512, 548
BciT130I CCWGG 3 cut(s) 231, 237, 595
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 2 cut(s) 438, 618
BfoI RGCGCY 1 cut(s) 538
Bme1390I CCNGG 4 cut(s) 225, 231, 237, 595
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 4 cut(s) 227, 233, 239, 591
BmiI GGNNCC 2 cut(s) 6, 547
BmrFI CCNGG 4 cut(s) 225, 231, 237, 595
BmsI GCATC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 651
BsaJI CCNNGG 5 cut(s) 223, 229, 235, 304, 594
BsaXI ACNNNNNCTCC 8 cut(s) 111, 141, 242, 272, 398, 428, 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 236, 618
Bse118I RCCGGY 1 cut(s) 523
Bse21I CCTNAGG 1 cut(s) 506
BseBI CCWGG 3 cut(s) 231, 237, 595
BseDI CCNNGG 5 cut(s) 223, 229, 235, 304, 594
BseGI GGATG 2 cut(s) 34, 102
BseLI CCNNNNNNNGG 3 cut(s) 230, 236, 618
BseMII CTCAG 2 cut(s) 232, 497
BseX3I CGGCCG 3 cut(s) 162, 525, 631
BseXI GCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 5 cut(s) 165, 405, 528, 585, 634
BshNI GGYRCC 1 cut(s) 545
BsiEI CGRYCG 5 cut(s) 165, 405, 528, 585, 634
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 4 cut(s) 64, 225, 524, 660
BslI CCNNNNNNNGG 3 cut(s) 230, 236, 618
BsmAI GTCTC 1 cut(s) 649
BsmBI CGTCTC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 421
Bsp143I GATC 3 cut(s) 540, 550, 621
BspCNI CTCAG 2 cut(s) 231, 498
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 6, 547
BspPI GGATC 2 cut(s) 548, 629
BspT107I GGYRCC 1 cut(s) 545
BsrBI CCGCTC 3 cut(s) 214, 426, 458
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 5 cut(s) 223, 229, 235, 304, 594
BssMI GATC 3 cut(s) 540, 550, 621
BssNI GRCGYC 1 cut(s) 651
Bst2UI CCWGG 3 cut(s) 231, 237, 595
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 364, 525
BstDEI CTNAG 3 cut(s) 218, 506, 707
BstF5I GGATG 2 cut(s) 34, 102
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 2 cut(s) 362, 537
BstKTI GATC 3 cut(s) 543, 553, 624
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 3 cut(s) 540, 550, 621
BstMCI CGRYCG 5 cut(s) 165, 405, 528, 585, 634
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 363, 485, 599
BstNI CCWGG 3 cut(s) 231, 237, 595
BstSCI CCNGG 4 cut(s) 223, 229, 235, 593
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BstZI CGGCCG 3 cut(s) 162, 525, 631
Bsu36I CCTNAGG 1 cut(s) 506
BtsCI GGATG 2 cut(s) 34, 102
Cac8I GCNNGC 2 cut(s) 364, 525
CfoI GCGC 2 cut(s) 362, 537
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 227, 233, 239, 591
CviAII CATG 1 cut(s) 385
DdeI CTNAG 3 cut(s) 218, 506, 707
DpnI GATC 3 cut(s) 542, 552, 623
DpnII GATC 3 cut(s) 540, 550, 621
EaeI YGGCCR 5 cut(s) 162, 427, 525, 603, 631
EagI CGGCCG 3 cut(s) 162, 525, 631
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
EciI GGCGGA 4 cut(s) 27, 269, 344, 463
EclXI CGGCCG 3 cut(s) 162, 525, 631
Eco47III AGCGCT 1 cut(s) 536
Eco52I CGGCCG 3 cut(s) 162, 525, 631
Eco81I CCTNAGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 421
EcoRII CCWGG 3 cut(s) 229, 235, 593
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 1 cut(s) 388
FaiI YATR 1 cut(s) 386
FatI CATG 1 cut(s) 384
FauI CCCGC 3 cut(s) 25, 219, 371
FblI GTMKAC 2 cut(s) 372, 405
FokI GGATG 2 cut(s) 21, 89
FspBI CTAG 2 cut(s) 438, 618
GlaI GCGC 2 cut(s) 361, 536
GsuI CTGGAG 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 538
HapII CCGG 4 cut(s) 64, 225, 524, 660
HhaI GCGC 2 cut(s) 362, 537
Hin1I GRCGYC 1 cut(s) 651
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 2 cut(s) 360, 535
HinP1I GCGC 2 cut(s) 360, 535
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HpaII CCGG 4 cut(s) 64, 225, 524, 660
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 373, 406
Hpy188I TCNGA 3 cut(s) 173, 649, 710
Hpy188III TCNNGA 2 cut(s) 421, 554
Hpy8I GTNNAC 2 cut(s) 373, 406
Hpy99I CGWCG 9 cut(s) 191, 395, 455, 517, 520, 533, 653, 656, 659
HpyAV CCTTC 3 cut(s) 133, 295, 427
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 390, 651
HpyCH4V TGCA 1 cut(s) 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 363, 485, 599
HpyF3I CTNAG 3 cut(s) 218, 506, 707
HpySE526I ACGT 2 cut(s) 390, 651
Hsp92I GRCGYC 1 cut(s) 651
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 2 cut(s) 360, 535
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Kzo9I GATC 3 cut(s) 540, 550, 621
LmnI GCTCC 3 cut(s) 4, 219, 662
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 438, 618
MaeII ACGT 2 cut(s) 390, 651
MaeIII GTNAC 1 cut(s) 54
MalI GATC 3 cut(s) 542, 552, 623
MbiI CCGCTC 3 cut(s) 214, 426, 458
MboI GATC 3 cut(s) 540, 550, 621
MboII GAAGA 2 cut(s) 172, 454
MflI RGATCY 1 cut(s) 621
MluCI AATT 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 295, 672
MroNI GCCGGC 1 cut(s) 523
MseI TTAA 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 4 cut(s) 64, 225, 524, 660
MspR9I CCNGG 4 cut(s) 225, 231, 237, 595
MvaI CCWGG 3 cut(s) 231, 237, 595
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 363, 485, 599
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 225
NdeII GATC 3 cut(s) 540, 550, 621
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 6, 547
NmeAIII GCCGAG 3 cut(s) 140, 285, 609
NmuCI GTSAC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PdiI GCCGGC 1 cut(s) 525
PflFI GACNNNGTC 1 cut(s) 653
Psp6I CCWGG 3 cut(s) 229, 235, 593
PspGI CCWGG 3 cut(s) 229, 235, 593
PspN4I GGNNCC 2 cut(s) 6, 547
PspPI GGNCC 4 cut(s) 227, 233, 239, 591
PsuI RGATCY 1 cut(s) 621
PsyI GACNNNGTC 1 cut(s) 653
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 715
Sau3AI GATC 3 cut(s) 540, 550, 621
Sau96I GGNCC 4 cut(s) 227, 233, 239, 591
ScrFI CCNGG 4 cut(s) 225, 231, 237, 595
SetI ASST 9 cut(s) 93, 324, 393, 471, 507, 512, 654, 667, 697
SfaNI GCATC 1 cut(s) 481
Sse9I AATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 438, 618
StyD4I CCNGG 4 cut(s) 223, 229, 235, 593
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 393, 654
TaqI TCGA 4 cut(s) 153, 318, 405, 531
TaqII GACCGA 2 cut(s) 391, 571
TasI AATT 1 cut(s) 344
Tru1I TTAA 1 cut(s) 715
Tru9I TTAA 1 cut(s) 715
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 401, 689
Tth111I GACNNNGTC 1 cut(s) 653
XapI RAATTY 1 cut(s) 344
XmiI GTMKAC 2 cut(s) 372, 405
XspI CTAG 2 cut(s) 438, 618
ZraI GACGTC 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.