Rh7BG200700

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005864
Physical Location & Seq
Forward (+)
16605311 .. 16608816
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG200700.1

Sequence Viewer

Length: 699 bp
ATGGAGCCAACACCACCCGCCAAATCCACCACACCTCCGCCGCCGCCGCCGCTCCTCCGGCGATTAGTCGCAATCGACACCAAGCTCTCTCAACAAATCCACATTCTCGCCAAACCCTTCCTCCCTCACTTCCTCCTCCTCCTCCTCGAACTCTCCGCCGACTTCCGATTATTCTTCCCCGTCGCCCTCTCCCTCCTCCTCACCCCGCTCCTCAGCCCCGGCCCAGGCCCAAACCCGAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCATTCCTCTCCTCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAAGAACATGAGCGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCTACCTCTCCGCCGATGCTCTACTCCACCTCAGGTCGACGTCGCCGGCCGTCGAGCGCTGGATCGGTGCCGATCAAGACAACAAGGCCGTTAGTGTTCTGGTGTCGGTCGTTTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCTTCGCCGGAGCTTGTCTGGGCGTGGTTGAGGGTGTAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

10.01

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 96 - 229 7.7e-20 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 500, 636
AccB1I GGYRCC 1 cut(s) 524
AccBSI CCGCTC 4 cut(s) 52, 208, 420, 452
AccI GTMKAC 3 cut(s) 366, 399, 494
AccII CGCG 1 cut(s) 354
AclWI GGATC 2 cut(s) 527, 611
AcoI YGGCCR 4 cut(s) 421, 504, 585, 613
AcsI RAATTY 1 cut(s) 338
AcyI GRCGYC 2 cut(s) 497, 633
AfeI AGCGCT 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 224, 600
AjnI CCWGG 2 cut(s) 223, 575
AloI GAACNNNNNNTCC 2 cut(s) 236, 268
AluBI AGCT 3 cut(s) 85, 647, 677
AluI AGCT 3 cut(s) 85, 647, 677
Alw26I GTCTC 1 cut(s) 631
AlwI GGATC 2 cut(s) 527, 611
Ama87I CYCGRG 1 cut(s) 415
Aor51HI AGCGCT 1 cut(s) 515
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
AspLEI GCGC 2 cut(s) 356, 516
AspS9I GGNCC 3 cut(s) 221, 227, 573
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 193, 334
AvaI CYCGRG 1 cut(s) 415
AxyI CCTNAGG 1 cut(s) 488
BanI GGYRCC 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 593
BccI CCATC 1 cut(s) 602
BceAI ACGGC 3 cut(s) 374, 491, 530
BciT130I CCWGG 2 cut(s) 225, 577
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 631
BfaI CTAG 2 cut(s) 432, 600
BfoI RGCGCY 1 cut(s) 517
Bme1390I CCNGG 3 cut(s) 219, 225, 577
BmeT110I CYCGRG 1 cut(s) 415
BmgT120I GGNCC 3 cut(s) 221, 227, 573
BmiI GGNNCC 2 cut(s) 6, 526
BmrFI CCNGG 3 cut(s) 219, 225, 577
BmsI GCATC 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 219
BsaHI GRCGYC 2 cut(s) 497, 633
BsaJI CCNNGG 4 cut(s) 217, 223, 298, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 600
Bse118I RCCGGY 1 cut(s) 502
Bse21I CCTNAGG 1 cut(s) 488
BseBI CCWGG 2 cut(s) 225, 577
BseDI CCNNGG 4 cut(s) 217, 223, 298, 576
BseLI CCNNNNNNNGG 2 cut(s) 224, 600
BseMII CTCAG 2 cut(s) 226, 502
BseX3I CGGCCG 2 cut(s) 504, 613
BseXI GCAGC 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 354
Bsh1285I CGRYCG 4 cut(s) 399, 507, 567, 616
BshNI GGYRCC 1 cut(s) 524
BsiEI CGRYCG 4 cut(s) 399, 507, 567, 616
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 4 cut(s) 58, 219, 503, 642
BslI CCNNNNNNNGG 2 cut(s) 224, 600
BsmAI GTCTC 1 cut(s) 631
BsmBI CGTCTC 1 cut(s) 631
BsoBI CYCGRG 1 cut(s) 415
Bsp143I GATC 3 cut(s) 519, 529, 603
BspCNI CTCAG 2 cut(s) 225, 501
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 6, 526
BspPI GGATC 2 cut(s) 527, 611
BspT107I GGYRCC 1 cut(s) 524
BsrBI CCGCTC 4 cut(s) 52, 208, 420, 452
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 4 cut(s) 217, 223, 298, 576
BssMI GATC 3 cut(s) 519, 529, 603
BssNI GRCGYC 2 cut(s) 497, 633
Bst2UI CCWGG 2 cut(s) 225, 577
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 2 cut(s) 497, 633
BstC8I GCNNGC 2 cut(s) 358, 504
BstDEI CTNAG 3 cut(s) 212, 488, 689
BstFNI CGCG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 2 cut(s) 356, 516
BstKTI GATC 3 cut(s) 522, 532, 606
BstMAI GTCTC 1 cut(s) 631
BstMBI GATC 3 cut(s) 519, 529, 603
BstMCI CGRYCG 4 cut(s) 399, 507, 567, 616
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 58, 357, 581
BstNI CCWGG 2 cut(s) 225, 577
BstSCI CCNGG 3 cut(s) 217, 223, 575
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BstZI CGGCCG 2 cut(s) 504, 613
Bsu36I CCTNAGG 1 cut(s) 488
Cac8I GCNNGC 2 cut(s) 358, 504
CfoI GCGC 2 cut(s) 356, 516
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 221, 227, 573
CseI GACGC 1 cut(s) 373
CviAII CATG 1 cut(s) 379
DdeI CTNAG 3 cut(s) 212, 488, 689
DpnI GATC 3 cut(s) 521, 531, 605
DpnII GATC 3 cut(s) 519, 529, 603
EaeI YGGCCR 4 cut(s) 421, 504, 585, 613
EagI CGGCCG 2 cut(s) 504, 613
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
EciI GGCGGA 5 cut(s) 27, 145, 263, 338, 457
EclXI CGGCCG 2 cut(s) 504, 613
Eco47III AGCGCT 1 cut(s) 515
Eco52I CGGCCG 2 cut(s) 504, 613
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 223, 575
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 1 cut(s) 382
FaiI YATR 1 cut(s) 380
FatI CATG 1 cut(s) 378
FauI CCCGC 3 cut(s) 25, 213, 365
FblI GTMKAC 3 cut(s) 366, 399, 494
FspBI CTAG 2 cut(s) 432, 600
GlaI GCGC 2 cut(s) 355, 515
GsuI CTGGAG 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 517
HapII CCGG 4 cut(s) 58, 219, 503, 642
HgaI GACGC 1 cut(s) 373
HhaI GCGC 2 cut(s) 356, 516
Hin1I GRCGYC 2 cut(s) 497, 633
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 2 cut(s) 354, 514
HinP1I GCGC 2 cut(s) 354, 514
HincII GTYRAC 2 cut(s) 400, 495
HindII GTYRAC 2 cut(s) 400, 495
HpaII CCGG 4 cut(s) 58, 219, 503, 642
HphI GGTGA 2 cut(s) 193, 334
Hpy166II GTNNAC 3 cut(s) 367, 400, 495
Hpy188I TCNGA 3 cut(s) 167, 631, 692
Hpy188III TCNNGA 2 cut(s) 415, 533
Hpy8I GTNNAC 3 cut(s) 367, 400, 495
Hpy99I CGWCG 7 cut(s) 185, 389, 449, 499, 502, 512, 635
HpyAV CCTTC 2 cut(s) 127, 421
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 497, 633
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 58, 357, 581
HpyF3I CTNAG 3 cut(s) 212, 488, 689
HpySE526I ACGT 2 cut(s) 497, 633
Hsp92I GRCGYC 2 cut(s) 497, 633
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 2 cut(s) 354, 514
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 3 cut(s) 519, 529, 603
LmnI GCTCC 4 cut(s) 4, 57, 213, 644
Lsp1109I GCAGC 1 cut(s) 593
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 432, 600
MaeII ACGT 2 cut(s) 497, 633
MalI GATC 3 cut(s) 521, 531, 605
MbiI CCGCTC 4 cut(s) 52, 208, 420, 452
MboI GATC 3 cut(s) 519, 529, 603
MboII GAAGA 3 cut(s) 166, 448, 628
MflI RGATCY 1 cut(s) 603
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 289, 654
MroNI GCCGGC 1 cut(s) 502
MseI TTAA 1 cut(s) 697
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 4 cut(s) 58, 219, 503, 642
MspR9I CCNGG 3 cut(s) 219, 225, 577
MvaI CCWGG 2 cut(s) 225, 577
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 58, 357, 581
NaeI GCCGGC 1 cut(s) 504
NciI CCSGG 1 cut(s) 219
NdeII GATC 3 cut(s) 519, 529, 603
NgoMIV GCCGGC 1 cut(s) 502
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 6, 526
NmeAIII GCCGAG 2 cut(s) 279, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 223, 575
PspGI CCWGG 2 cut(s) 223, 575
PspN4I GGNNCC 2 cut(s) 6, 526
PspPI GGNCC 3 cut(s) 221, 227, 573
PsuI RGATCY 1 cut(s) 603
SalI GTCGAC 2 cut(s) 398, 493
SaqAI TTAA 1 cut(s) 697
Sau3AI GATC 3 cut(s) 519, 529, 603
Sau96I GGNCC 3 cut(s) 221, 227, 573
ScrFI CCNGG 3 cut(s) 219, 225, 577
SfaNI GCATC 1 cut(s) 463
Sse9I AATT 1 cut(s) 338
SspMI CTAG 2 cut(s) 432, 600
StyD4I CCNGG 3 cut(s) 217, 223, 575
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 500, 636
TaqI TCGA 6 cut(s) 75, 147, 312, 399, 494, 510
TaqII GACCGA 2 cut(s) 385, 553
TasI AATT 1 cut(s) 338
TauI GCSGC 9 cut(s) 43, 46, 49, 52, 354, 423, 452, 587, 618
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 1 cut(s) 671
XapI RAATTY 1 cut(s) 338
XmiI GTMKAC 3 cut(s) 366, 399, 494
XspI CTAG 2 cut(s) 432, 600
ZraI GACGTC 2 cut(s) 498, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.