Rw7G017510

Acid phosphatase homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005864
Physical Location & Seq
Forward (+)
18440165 .. 18443616
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017510.1

Sequence Viewer

Length: 705 bp
ATGGAGCCAACACCACCCGCCAAGTCCACCACACATCCGCCGCCGCCGCCGCTCCTCCGTCGATTAGTCGCAATCGACACGAAGCTCTCTCAACACATTCACATTCTCGCCAAACCCTTCCTCCCTCACTTCCTCCTCCTCCTCCTCGAACTCTCCGCCGACTTCCGATTATTCTTCCCCGTCGCCCTCTCCCTCCTCCTCGCCCCGCTCCTCAGCTCCGGCCCAGGCCCAAACCCGAACCCGAACTCCAGCCCAATCCAACTCCTCCGCCCATTCCTCTCCCCTCTCCTCCTCGGCCTCCTCCTCGACCTCGCCCTAATCGGCCTCATCAAATTCACCGTCCGCCGCGCCCGCCCCGTCTACAACAAGAACATGAACGTCGCCGTTTCGGTCGACCACTTCTCCTTCCCGAGCGGCCACGCCTCTAGGGTTTGCTTCGTCGCCGCTCTCTTCCACCTCTCCGCCGCCGCCCTCGCCGATGCTCTACTCCACCTCAGGTCGACGTCGCCGCCGGCCGTCGAGCGCTGGATCGGTGCCGATCAAGACAAGGCCGTCAGTGTTCTGCTGTCGGTCGTTTGGGCCTGGGCAGCGGCCACTTCCATCTCTAGGATCTTGCTCGGCCGCCACTTCGTCTCCGACGTCTTCGCCGGAGCTTGTTTGGGCGTGGTTGAGGGTGCAGTAGCTTTTCATTTCCTCAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP2

Protein Analysis

234

Amino Acids

25.34

Weight (kDa)

10.12

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 95 - 231 6.6e-19 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AatII GACGTC 2 cut(s) 506, 642
AccB1I GGYRCC 1 cut(s) 533
AccBSI CCGCTC 4 cut(s) 52, 208, 414, 446
AccI GTMKAC 3 cut(s) 360, 393, 500
AccII CGCG 1 cut(s) 348
AclWI GGATC 2 cut(s) 536, 617
AcoI YGGCCR 4 cut(s) 415, 513, 591, 619
AcsI RAATTY 1 cut(s) 332
AcyI GRCGYC 2 cut(s) 503, 639
AfeI AGCGCT 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 606
AjnI CCWGG 2 cut(s) 223, 581
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 85, 216, 653, 683
AluI AGCT 4 cut(s) 85, 216, 653, 683
Alw26I GTCTC 1 cut(s) 637
AlwI GGATC 2 cut(s) 536, 617
Ama87I CYCGRG 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 524
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspLEI GCGC 2 cut(s) 350, 525
AspS9I GGNCC 3 cut(s) 221, 227, 579
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 409
AxyI CCTNAGG 1 cut(s) 494
BanI GGYRCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 634
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 599
BccI CCATC 1 cut(s) 608
BceAI ACGGC 3 cut(s) 368, 500, 536
BciT130I CCWGG 2 cut(s) 225, 583
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 2 cut(s) 426, 606
BfoI RGCGCY 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 225, 583
BmeT110I CYCGRG 1 cut(s) 409
BmgT120I GGNCC 3 cut(s) 221, 227, 579
BmiI GGNNCC 2 cut(s) 6, 535
BmrFI CCNGG 2 cut(s) 225, 583
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 634
BpmI CTGGAG 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 503, 639
BsaJI CCNNGG 3 cut(s) 223, 292, 582
BsaXI ACNNNNNCTCC 8 cut(s) 105, 135, 230, 260, 386, 416, 617, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 606
Bse118I RCCGGY 1 cut(s) 511
Bse21I CCTNAGG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 225, 583
BseDI CCNNGG 3 cut(s) 223, 292, 582
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 226, 508
BseX3I CGGCCG 2 cut(s) 513, 619
BseXI GCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 348
Bsh1285I CGRYCG 4 cut(s) 393, 516, 573, 622
BshNI GGYRCC 1 cut(s) 533
BsiEI CGRYCG 4 cut(s) 393, 516, 573, 622
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 3 cut(s) 219, 512, 648
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 1 cut(s) 637
BsmBI CGTCTC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 409
Bsp143I GATC 3 cut(s) 528, 538, 609
BspCNI CTCAG 2 cut(s) 225, 507
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 6, 535
BspPI GGATC 2 cut(s) 536, 617
BspT107I GGYRCC 1 cut(s) 533
BsrBI CCGCTC 4 cut(s) 52, 208, 414, 446
BsrFI RCCGGY 1 cut(s) 511
BssAI RCCGGY 1 cut(s) 511
BssECI CCNNGG 3 cut(s) 223, 292, 582
BssMI GATC 3 cut(s) 528, 538, 609
BssNI GRCGYC 2 cut(s) 503, 639
Bst2UI CCWGG 2 cut(s) 225, 583
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 455
BstACI GRCGYC 2 cut(s) 503, 639
BstC8I GCNNGC 2 cut(s) 352, 513
BstDEI CTNAG 3 cut(s) 212, 494, 695
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 2 cut(s) 350, 525
BstKTI GATC 3 cut(s) 531, 541, 612
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 3 cut(s) 528, 538, 609
BstMCI CGRYCG 4 cut(s) 393, 516, 573, 622
BstMWI GCNNNNNNNGC 5 cut(s) 46, 49, 351, 473, 587
BstNI CCWGG 2 cut(s) 225, 583
BstSCI CCNGG 2 cut(s) 223, 581
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 599
BstV2I GAAGAC 1 cut(s) 634
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
BstZI CGGCCG 2 cut(s) 513, 619
Bsu36I CCTNAGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 352, 513
CfoI GCGC 2 cut(s) 350, 525
Cfr10I RCCGGY 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 221, 227, 579
CviAII CATG 1 cut(s) 373
DdeI CTNAG 3 cut(s) 212, 494, 695
DpnI GATC 3 cut(s) 530, 540, 611
DpnII GATC 3 cut(s) 528, 538, 609
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 4 cut(s) 415, 513, 591, 619
EagI CGGCCG 2 cut(s) 513, 619
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 5 cut(s) 27, 145, 257, 332, 451
EclXI CGGCCG 2 cut(s) 513, 619
Eco47III AGCGCT 1 cut(s) 524
Eco52I CGGCCG 2 cut(s) 513, 619
Eco81I CCTNAGG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 223, 581
Esp3I CGTCTC 1 cut(s) 637
FaeI CATG 1 cut(s) 376
FaiI YATR 1 cut(s) 374
FatI CATG 1 cut(s) 372
FauI CCCGC 3 cut(s) 25, 213, 359
FblI GTMKAC 3 cut(s) 360, 393, 500
FokI GGATG 1 cut(s) 21
FspBI CTAG 2 cut(s) 426, 606
GlaI GCGC 2 cut(s) 349, 524
GsuI CTGGAG 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 526
HapII CCGG 3 cut(s) 219, 512, 648
HhaI GCGC 2 cut(s) 350, 525
Hin1I GRCGYC 2 cut(s) 503, 639
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 2 cut(s) 348, 523
HinP1I GCGC 2 cut(s) 348, 523
HincII GTYRAC 2 cut(s) 394, 501
HindII GTYRAC 2 cut(s) 394, 501
HpaII CCGG 3 cut(s) 219, 512, 648
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 4 cut(s) 27, 361, 394, 501
Hpy188I TCNGA 3 cut(s) 167, 637, 698
Hpy188III TCNNGA 2 cut(s) 409, 542
Hpy8I GTNNAC 4 cut(s) 27, 361, 394, 501
Hpy99I CGWCG 8 cut(s) 63, 185, 383, 443, 505, 508, 521, 641
HpyAV CCTTC 2 cut(s) 127, 415
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 3 cut(s) 378, 503, 639
HpyCH4V TGCA 1 cut(s) 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 49, 351, 473, 587
HpyF3I CTNAG 3 cut(s) 212, 494, 695
HpySE526I ACGT 3 cut(s) 378, 503, 639
Hsp92I GRCGYC 2 cut(s) 503, 639
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 2 cut(s) 348, 523
KroI GCCGGC 1 cut(s) 511
KroNI GCCGGC 1 cut(s) 513
Kzo9I GATC 3 cut(s) 528, 538, 609
LmnI GCTCC 5 cut(s) 4, 57, 213, 221, 650
Lsp1109I GCAGC 1 cut(s) 599
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 426, 606
MaeII ACGT 3 cut(s) 378, 503, 639
MalI GATC 3 cut(s) 530, 540, 611
MbiI CCGCTC 4 cut(s) 52, 208, 414, 446
MboI GATC 3 cut(s) 528, 538, 609
MboII GAAGA 3 cut(s) 166, 442, 634
MflI RGATCY 1 cut(s) 609
MluCI AATT 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 283, 660
MroNI GCCGGC 1 cut(s) 511
MseI TTAA 1 cut(s) 703
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 3 cut(s) 219, 512, 648
MspR9I CCNGG 2 cut(s) 225, 583
MvaI CCWGG 2 cut(s) 225, 583
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 5 cut(s) 46, 49, 351, 473, 587
NaeI GCCGGC 1 cut(s) 513
NdeII GATC 3 cut(s) 528, 538, 609
NgoMIV GCCGGC 1 cut(s) 511
NlaIII CATG 1 cut(s) 376
NlaIV GGNNCC 2 cut(s) 6, 535
NmeAIII GCCGAG 2 cut(s) 273, 597
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 223, 581
PspGI CCWGG 2 cut(s) 223, 581
PspN4I GGNNCC 2 cut(s) 6, 535
PspPI GGNCC 3 cut(s) 221, 227, 579
PsuI RGATCY 1 cut(s) 609
SalI GTCGAC 2 cut(s) 392, 499
SaqAI TTAA 1 cut(s) 703
Sau3AI GATC 3 cut(s) 528, 538, 609
Sau96I GGNCC 3 cut(s) 221, 227, 579
ScrFI CCNGG 2 cut(s) 225, 583
SfaNI GCATC 1 cut(s) 469
Sse9I AATT 1 cut(s) 332
SspMI CTAG 2 cut(s) 426, 606
StyD4I CCNGG 2 cut(s) 223, 581
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 3 cut(s) 381, 506, 642
TaqI TCGA 7 cut(s) 61, 75, 147, 306, 393, 500, 519
TaqII GACCGA 2 cut(s) 379, 559
TasI AATT 1 cut(s) 332
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TscAI CASTG 1 cut(s) 562
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 2 cut(s) 389, 677
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 562
XapI RAATTY 1 cut(s) 332
XmiI GTMKAC 3 cut(s) 360, 393, 500
XspI CTAG 2 cut(s) 426, 606
ZraI GACGTC 2 cut(s) 504, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.